miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 27286 0.67 0.387074
Target:  5'- cCGcCUCGGCAGCGcGuuGCucGGuCGCCgCCu -3'
miRNA:   3'- -GC-GAGCCGUUGUaCggCG--UC-GUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 17522 0.67 0.387074
Target:  5'- uCGCuUCGGC--CA-GCUGCGGCGCCa- -3'
miRNA:   3'- -GCG-AGCCGuuGUaCGGCGUCGUGGgg -5'
30424 3' -58.8 NC_006548.1 + 29738 0.67 0.387074
Target:  5'- cCGCcacuacCGGCAGCcgcaccUGCCGCaccGGCACCgCu -3'
miRNA:   3'- -GCGa-----GCCGUUGu-----ACGGCG---UCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 27020 0.67 0.390696
Target:  5'- uGCUCGGCcu--UGUCGCcuacguccuggacagAGCcCCCCa -3'
miRNA:   3'- gCGAGCCGuuguACGGCG---------------UCGuGGGG- -5'
30424 3' -58.8 NC_006548.1 + 32854 0.66 0.412885
Target:  5'- aCGCUUGcCAGCAgcuggauguccgGCCacaccgGCAGCGCCCa -3'
miRNA:   3'- -GCGAGCcGUUGUa-----------CGG------CGUCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 19198 0.66 0.414769
Target:  5'- cCGCUCGGaucuccCAGC--GCUGC-GCugCCCg -3'
miRNA:   3'- -GCGAGCC------GUUGuaCGGCGuCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 36253 0.66 0.424267
Target:  5'- aGUUCGGCGGCuggaCUGCGGaCGUCCCg -3'
miRNA:   3'- gCGAGCCGUUGuac-GGCGUC-GUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 32478 0.66 0.433894
Target:  5'- cCGCgaaCGGCAACG-GCgGCgacGGCugCCg -3'
miRNA:   3'- -GCGa--GCCGUUGUaCGgCG---UCGugGGg -5'
30424 3' -58.8 NC_006548.1 + 9642 0.66 0.433894
Target:  5'- gCGCUCGau-GCAcUGaUCGCGuGCGCCCCu -3'
miRNA:   3'- -GCGAGCcguUGU-AC-GGCGU-CGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 37517 0.65 0.442666
Target:  5'- aGCcgUGGCGGCAUGUacucccaaauuggCGUacuGGCACCCg -3'
miRNA:   3'- gCGa-GCCGUUGUACG-------------GCG---UCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 25040 0.65 0.442666
Target:  5'- gGCgUCGGCGGCguucaagGUGUCGUacAGCACacugCCCg -3'
miRNA:   3'- gCG-AGCCGUUG-------UACGGCG--UCGUG----GGG- -5'
30424 3' -58.8 NC_006548.1 + 20973 0.77 0.068885
Target:  5'- aGUUCGGcCAGCAaGCugCGCAGCACCUCg -3'
miRNA:   3'- gCGAGCC-GUUGUaCG--GCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 15464 0.79 0.05456
Target:  5'- gGC-CGGCAGCAucUGCUGCAGCuugaagaggaACCCCu -3'
miRNA:   3'- gCGaGCCGUUGU--ACGGCGUCG----------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 20131 0.83 0.026099
Target:  5'- gGCUCGGCAuagaGCAUGCCGUcgcGCACCuCCa -3'
miRNA:   3'- gCGAGCCGU----UGUACGGCGu--CGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 9420 1.11 0.000179
Target:  5'- cCGCUCGGCAACAUGCCGCAGCACCCCu -3'
miRNA:   3'- -GCGAGCCGUUGUACGGCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 15842 0.68 0.319412
Target:  5'- aGUUCGGCGAgcacCGUGUCGaGGCugugaccuucACCCCg -3'
miRNA:   3'- gCGAGCCGUU----GUACGGCgUCG----------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 27085 0.75 0.103052
Target:  5'- uGCUgCGGCAGCcaguaCGCAGCGCCUCa -3'
miRNA:   3'- gCGA-GCCGUUGuacg-GCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 9310 0.68 0.319412
Target:  5'- uGCUCagccgGGCGAUAUGUgGCAaauGCCCCa -3'
miRNA:   3'- gCGAG-----CCGUUGUACGgCGUcg-UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 7693 0.69 0.289061
Target:  5'- -uCUCGGUggUGUugGCCaGCAgGCGCCCCu -3'
miRNA:   3'- gcGAGCCGuuGUA--CGG-CGU-CGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 35200 0.69 0.279697
Target:  5'- aGggCGGCAuCGUuggGCCGCuggacgucauguucGGCGCCCCg -3'
miRNA:   3'- gCgaGCCGUuGUA---CGGCG--------------UCGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.