Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30424 | 3' | -58.8 | NC_006548.1 | + | 7524 | 0.7 | 0.217329 |
Target: 5'- uGCUCGGcCAACuugGCgaagccuucaCGCAGUugCCCc -3' miRNA: 3'- gCGAGCC-GUUGua-CG----------GCGUCGugGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 17072 | 0.7 | 0.223165 |
Target: 5'- gGCUCGGCcAgGUGgCGaguacccagGGCACCCCc -3' miRNA: 3'- gCGAGCCGuUgUACgGCg--------UCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 6878 | 0.69 | 0.267817 |
Target: 5'- aGUUCGGUGACcgGCUcCGGCGCCa- -3' miRNA: 3'- gCGAGCCGUUGuaCGGcGUCGUGGgg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 35200 | 0.69 | 0.279697 |
Target: 5'- aGggCGGCAuCGUuggGCCGCuggacgucauguucGGCGCCCCg -3' miRNA: 3'- gCgaGCCGUuGUA---CGGCG--------------UCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 7693 | 0.69 | 0.289061 |
Target: 5'- -uCUCGGUggUGUugGCCaGCAgGCGCCCCu -3' miRNA: 3'- gcGAGCCGuuGUA--CGG-CGU-CGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 9310 | 0.68 | 0.319412 |
Target: 5'- uGCUCagccgGGCGAUAUGUgGCAaauGCCCCa -3' miRNA: 3'- gCGAG-----CCGUUGUACGgCGUcg-UGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 20585 | 0.68 | 0.296431 |
Target: 5'- cCGCagCGGCGGCAgaggcUGCUGCGGCgucgACgCCu -3' miRNA: 3'- -GCGa-GCCGUUGU-----ACGGCGUCG----UGgGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 28141 | 0.68 | 0.303946 |
Target: 5'- aGUUCGGCcuGCAgGCCGCcAGcCGCCUg -3' miRNA: 3'- gCGAGCCGu-UGUaCGGCG-UC-GUGGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 33386 | 0.68 | 0.335462 |
Target: 5'- aCGCagGGCGuACAgcagGCugCGCAGCGCCgCa -3' miRNA: 3'- -GCGagCCGU-UGUa---CG--GCGUCGUGGgG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 14366 | 0.67 | 0.360625 |
Target: 5'- gGCUCGGgAACugcGCCuGCAGguCCgCg -3' miRNA: 3'- gCGAGCCgUUGua-CGG-CGUCguGGgG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 36407 | 0.67 | 0.3693 |
Target: 5'- cCGgaCGGCcGCAUGCC-CAGCGCa-- -3' miRNA: 3'- -GCgaGCCGuUGUACGGcGUCGUGggg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 36697 | 0.67 | 0.378117 |
Target: 5'- gCGC-CGGCcuCAUGCgGCgcuGGCACCg- -3' miRNA: 3'- -GCGaGCCGuuGUACGgCG---UCGUGGgg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 27286 | 0.67 | 0.387074 |
Target: 5'- cCGcCUCGGCAGCGcGuuGCucGGuCGCCgCCu -3' miRNA: 3'- -GC-GAGCCGUUGUaCggCG--UC-GUGG-GG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 17522 | 0.67 | 0.387074 |
Target: 5'- uCGCuUCGGC--CA-GCUGCGGCGCCa- -3' miRNA: 3'- -GCG-AGCCGuuGUaCGGCGUCGUGGgg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 29738 | 0.67 | 0.387074 |
Target: 5'- cCGCcacuacCGGCAGCcgcaccUGCCGCaccGGCACCgCu -3' miRNA: 3'- -GCGa-----GCCGUUGu-----ACGGCG---UCGUGGgG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 27020 | 0.67 | 0.390696 |
Target: 5'- uGCUCGGCcu--UGUCGCcuacguccuggacagAGCcCCCCa -3' miRNA: 3'- gCGAGCCGuuguACGGCG---------------UCGuGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 32854 | 0.66 | 0.412885 |
Target: 5'- aCGCUUGcCAGCAgcuggauguccgGCCacaccgGCAGCGCCCa -3' miRNA: 3'- -GCGAGCcGUUGUa-----------CGG------CGUCGUGGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 19198 | 0.66 | 0.414769 |
Target: 5'- cCGCUCGGaucuccCAGC--GCUGC-GCugCCCg -3' miRNA: 3'- -GCGAGCC------GUUGuaCGGCGuCGugGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 36253 | 0.66 | 0.424267 |
Target: 5'- aGUUCGGCGGCuggaCUGCGGaCGUCCCg -3' miRNA: 3'- gCGAGCCGUUGuac-GGCGUC-GUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 32478 | 0.66 | 0.433894 |
Target: 5'- cCGCgaaCGGCAACG-GCgGCgacGGCugCCg -3' miRNA: 3'- -GCGa--GCCGUUGUaCGgCG---UCGugGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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