miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30425 5' -57 NC_006548.1 + 35744 0.66 0.502522
Target:  5'- -aGCCGCaGCGuCCAGAGUCCggucgaGCGg -3'
miRNA:   3'- acCGGCGaCGUuGGUUUCGGGag----UGC- -5'
30425 5' -57 NC_006548.1 + 27085 0.66 0.502522
Target:  5'- -uGCUGCgGCAGCCAGuacgcAGCgCCUCAa- -3'
miRNA:   3'- acCGGCGaCGUUGGUU-----UCG-GGAGUgc -5'
30425 5' -57 NC_006548.1 + 6182 0.66 0.502522
Target:  5'- uUGGCCGUgacCuuCCGAGacucugguGCCCUCACc -3'
miRNA:   3'- -ACCGGCGac-GuuGGUUU--------CGGGAGUGc -5'
30425 5' -57 NC_006548.1 + 8451 0.66 0.502522
Target:  5'- uUGGCCGg-GCucucGCCuAGGGCCUUgGCGa -3'
miRNA:   3'- -ACCGGCgaCGu---UGG-UUUCGGGAgUGC- -5'
30425 5' -57 NC_006548.1 + 35636 0.66 0.502522
Target:  5'- aGGCaca---GACCAAAGCCCUCgGCGa -3'
miRNA:   3'- aCCGgcgacgUUGGUUUCGGGAG-UGC- -5'
30425 5' -57 NC_006548.1 + 36963 0.66 0.491907
Target:  5'- cGGCCuGCaGCAGCCGGuugcggugcGCCCacgaCACGg -3'
miRNA:   3'- aCCGG-CGaCGUUGGUUu--------CGGGa---GUGC- -5'
30425 5' -57 NC_006548.1 + 3654 0.66 0.491907
Target:  5'- cUGGCUGCuaccUGCuacGCCGAcgaAGCCgUUACGc -3'
miRNA:   3'- -ACCGGCG----ACGu--UGGUU---UCGGgAGUGC- -5'
30425 5' -57 NC_006548.1 + 30026 0.66 0.491907
Target:  5'- aGGCgCGaaGCAGCC-AGGCCCggaGCa -3'
miRNA:   3'- aCCG-GCgaCGUUGGuUUCGGGag-UGc -5'
30425 5' -57 NC_006548.1 + 23804 0.66 0.491907
Target:  5'- aGGCUGCUgGCGugCGGAaaUCUCGCa -3'
miRNA:   3'- aCCGGCGA-CGUugGUUUcgGGAGUGc -5'
30425 5' -57 NC_006548.1 + 12588 0.66 0.491907
Target:  5'- aGGCCaGCUggucgGCGccggauGCCGAGGCCagCUUACGg -3'
miRNA:   3'- aCCGG-CGA-----CGU------UGGUUUCGG--GAGUGC- -5'
30425 5' -57 NC_006548.1 + 26605 0.66 0.491907
Target:  5'- -aGCCGaaugGCAcGCCAuAGCCCUC-CGu -3'
miRNA:   3'- acCGGCga--CGU-UGGUuUCGGGAGuGC- -5'
30425 5' -57 NC_006548.1 + 13586 0.66 0.491907
Target:  5'- -aGCUGCUGCucAACCAgauccagaaAAGCCUggauUCGCGa -3'
miRNA:   3'- acCGGCGACG--UUGGU---------UUCGGG----AGUGC- -5'
30425 5' -57 NC_006548.1 + 6763 0.66 0.481396
Target:  5'- gUGGCCGCUG--ACCGuguguGGUCCU-ACGa -3'
miRNA:   3'- -ACCGGCGACguUGGUu----UCGGGAgUGC- -5'
30425 5' -57 NC_006548.1 + 20538 0.66 0.481396
Target:  5'- -cGCCGCUGCGgaagaGCCGcaGGGCaCCgUCACc -3'
miRNA:   3'- acCGGCGACGU-----UGGU--UUCG-GG-AGUGc -5'
30425 5' -57 NC_006548.1 + 28318 0.66 0.470995
Target:  5'- uUGGCCGCauaaccgaugGCAguACCcAGGCCCUUg-- -3'
miRNA:   3'- -ACCGGCGa---------CGU--UGGuUUCGGGAGugc -5'
30425 5' -57 NC_006548.1 + 27097 0.66 0.470995
Target:  5'- aGGCCGCc---ACCAuGGCCCUgAUGc -3'
miRNA:   3'- aCCGGCGacguUGGUuUCGGGAgUGC- -5'
30425 5' -57 NC_006548.1 + 509 0.66 0.46071
Target:  5'- cGGCCGCcuggaGCGuuuccACCAGGGCCUUgAgGa -3'
miRNA:   3'- aCCGGCGa----CGU-----UGGUUUCGGGAgUgC- -5'
30425 5' -57 NC_006548.1 + 18568 0.66 0.46071
Target:  5'- gGGCaugaGC-GCAGCUggcgugGAAGCCCgCACGg -3'
miRNA:   3'- aCCGg---CGaCGUUGG------UUUCGGGaGUGC- -5'
30425 5' -57 NC_006548.1 + 9654 0.67 0.450546
Target:  5'- aGGUgGCUGgGugCGGGGCauggcgguguuCCUCACGc -3'
miRNA:   3'- aCCGgCGACgUugGUUUCG-----------GGAGUGC- -5'
30425 5' -57 NC_006548.1 + 15958 0.67 0.449536
Target:  5'- gGcGCCGCggauuggGUAgGCCAGAGCCuccuuuaCUCGCGg -3'
miRNA:   3'- aC-CGGCGa------CGU-UGGUUUCGG-------GAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.