miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30426 5' -55.4 NC_006548.1 + 14448 0.68 0.508258
Target:  5'- gCCggCGacgaccUGGaCgCACGCAGCGAGgCGCu -3'
miRNA:   3'- -GGaaGCa-----ACC-GgGUGCGUCGUUC-GCG- -5'
30426 5' -55.4 NC_006548.1 + 7164 0.68 0.508258
Target:  5'- gCCUggggCGUgacgaGGCCCugGUgaucAGCAcGGCGUu -3'
miRNA:   3'- -GGAa---GCAa----CCGGGugCG----UCGU-UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 2326 0.68 0.456092
Target:  5'- uCCUguUCGUcGG-CUGCGCGGCG-GCGCc -3'
miRNA:   3'- -GGA--AGCAaCCgGGUGCGUCGUuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 28708 0.68 0.466301
Target:  5'- gUCUUCGUucuguuUGGCCaggCGCGCAGC-GGCu- -3'
miRNA:   3'- -GGAAGCA------ACCGG---GUGCGUCGuUCGcg -5'
30426 5' -55.4 NC_006548.1 + 36853 0.68 0.476627
Target:  5'- gCCUggCGcUGGUUCAuuCGCAGCGagucgaccGGCGCg -3'
miRNA:   3'- -GGAa-GCaACCGGGU--GCGUCGU--------UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 13079 0.69 0.446004
Target:  5'- cCCUUCaGgacgcccUGGUCCAguacaaGCAGCAGGuCGCg -3'
miRNA:   3'- -GGAAG-Ca------ACCGGGUg-----CGUCGUUC-GCG- -5'
30426 5' -55.4 NC_006548.1 + 7694 0.7 0.397522
Target:  5'- --cUCGgUGGUgUugGcCAGCAGGCGCc -3'
miRNA:   3'- ggaAGCaACCGgGugC-GUCGUUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 20856 0.7 0.370106
Target:  5'- gCCUUC--UGGCgCG-GCAGCAGGCGg -3'
miRNA:   3'- -GGAAGcaACCGgGUgCGUCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 20986 0.7 0.370106
Target:  5'- gCUUCGgcaGuGCUCACGCcauugcagcGCGAGCGCa -3'
miRNA:   3'- gGAAGCaa-C-CGGGUGCGu--------CGUUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 36461 0.71 0.34401
Target:  5'- cUCUUCGaaccgUGcagaCCCACGCGGCugagcAGCGCg -3'
miRNA:   3'- -GGAAGCa----ACc---GGGUGCGUCGu----UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 25934 0.75 0.193343
Target:  5'- --gUCGUaacGGCCCGCGCgggccAGCAGGCGg -3'
miRNA:   3'- ggaAGCAa--CCGGGUGCG-----UCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 28014 0.78 0.109259
Target:  5'- gCUUUGUguuggugcccagGGCCUugGCGGCAAGCGa -3'
miRNA:   3'- gGAAGCAa-----------CCGGGugCGUCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 10188 1.14 0.000262
Target:  5'- gCCUUCGUUGGCCCACGCAGCAAGCGCg -3'
miRNA:   3'- -GGAAGCAACCGGGUGCGUCGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.