miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30426 5' -55.4 NC_006548.1 + 25934 0.75 0.193343
Target:  5'- --gUCGUaacGGCCCGCGCgggccAGCAGGCGg -3'
miRNA:   3'- ggaAGCAa--CCGGGUGCG-----UCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 25983 0.66 0.596257
Target:  5'- cCCUcagaUgGUUaaucGCCC-CGCAGCGGGgGCa -3'
miRNA:   3'- -GGA----AgCAAc---CGGGuGCGUCGUUCgCG- -5'
30426 5' -55.4 NC_006548.1 + 28014 0.78 0.109259
Target:  5'- gCUUUGUguuggugcccagGGCCUugGCGGCAAGCGa -3'
miRNA:   3'- gGAAGCAa-----------CCGGGugCGUCGUUCGCg -5'
30426 5' -55.4 NC_006548.1 + 28708 0.68 0.466301
Target:  5'- gUCUUCGUucuguuUGGCCaggCGCGCAGC-GGCu- -3'
miRNA:   3'- -GGAAGCA------ACCGG---GUGCGUCGuUCGcg -5'
30426 5' -55.4 NC_006548.1 + 28883 0.66 0.630018
Target:  5'- aCCUUCGggccaccGGCCaaaccgucgAgGCGGCcGGCGCc -3'
miRNA:   3'- -GGAAGCaa-----CCGGg--------UgCGUCGuUCGCG- -5'
30426 5' -55.4 NC_006548.1 + 32866 0.66 0.585054
Target:  5'- uUUUCGUgcugggGGCCuUGCGCuGCu-GCGCg -3'
miRNA:   3'- gGAAGCAa-----CCGG-GUGCGuCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 33281 0.66 0.573892
Target:  5'- gCUUcCGUUGGCagaccuccggCCGCGaggAGCAugcGGCGCu -3'
miRNA:   3'- gGAA-GCAACCG----------GGUGCg--UCGU---UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 34033 0.67 0.551727
Target:  5'- gCCUUCGacGGCCgaGCGCcacgguacAGCu-GCGCa -3'
miRNA:   3'- -GGAAGCaaCCGGg-UGCG--------UCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 35939 0.67 0.540741
Target:  5'- aCCggcgaGUUGGCCgGCaggGUGGCGGcGCGCg -3'
miRNA:   3'- -GGaag--CAACCGGgUG---CGUCGUU-CGCG- -5'
30426 5' -55.4 NC_006548.1 + 36461 0.71 0.34401
Target:  5'- cUCUUCGaaccgUGcagaCCCACGCGGCugagcAGCGCg -3'
miRNA:   3'- -GGAAGCa----ACc---GGGUGCGUCGu----UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 36590 0.67 0.551727
Target:  5'- gCCg-CGgccGGCaCCGCGguGCucGCGCg -3'
miRNA:   3'- -GGaaGCaa-CCG-GGUGCguCGuuCGCG- -5'
30426 5' -55.4 NC_006548.1 + 36853 0.68 0.476627
Target:  5'- gCCUggCGcUGGUUCAuuCGCAGCGagucgaccGGCGCg -3'
miRNA:   3'- -GGAa-GCaACCGGGU--GCGUCGU--------UCGCG- -5'
30426 5' -55.4 NC_006548.1 + 37477 0.66 0.618748
Target:  5'- ---cCGUU-GCCCAC-CAGCGAGCuagGCg -3'
miRNA:   3'- ggaaGCAAcCGGGUGcGUCGUUCG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.