miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 9519 0.68 0.836701
Target:  5'- cAGGAGGCugCUcugguGcgCGuCGGCCAGGUg -3'
miRNA:   3'- -UCCUUCGugGG-----UuaGUuGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 15889 0.68 0.82697
Target:  5'- aAGGAGGCucuggccuACCCAAUCcGCGgcGCCAu-- -3'
miRNA:   3'- -UCCUUCG--------UGGGUUAGuUGU--UGGUucg -5'
30428 5' -48.7 NC_006548.1 + 2854 0.68 0.821015
Target:  5'- cGGAGGUcaucACgCUGAUCAACGaugcguuccgcguggACCAAGCu -3'
miRNA:   3'- uCCUUCG----UG-GGUUAGUUGU---------------UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 34037 0.69 0.806797
Target:  5'- uGGA---GCCU--UCGACGGCCGAGCg -3'
miRNA:   3'- uCCUucgUGGGuuAGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 16485 0.69 0.79638
Target:  5'- cGGcaGAGCACCUGGagCAGCAGCUGcAGCg -3'
miRNA:   3'- uCC--UUCGUGGGUUa-GUUGUUGGU-UCG- -5'
30428 5' -48.7 NC_006548.1 + 12378 0.69 0.785761
Target:  5'- cAGGccGGCgAUCCAcUCAGCGguACCGGGCa -3'
miRNA:   3'- -UCCu-UCG-UGGGUuAGUUGU--UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 13347 0.69 0.785761
Target:  5'- ---cGGCGCUCAAaCAGCGACCuGGCc -3'
miRNA:   3'- uccuUCGUGGGUUaGUUGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 27992 0.69 0.785761
Target:  5'- uGGAaaAGgGCCUGAUucCGGCGGCCGAGUu -3'
miRNA:   3'- uCCU--UCgUGGGUUA--GUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 30711 0.69 0.774954
Target:  5'- uAGcGAccGGCACCgGggcAUCAGCAGCCccuacGAGCg -3'
miRNA:   3'- -UC-CU--UCGUGGgU---UAGUUGUUGG-----UUCG- -5'
30428 5' -48.7 NC_006548.1 + 20315 0.69 0.772772
Target:  5'- cGGAAGCGCCCuacgcggugaCGGCucuGACCGAGa -3'
miRNA:   3'- uCCUUCGUGGGuua-------GUUG---UUGGUUCg -5'
30428 5' -48.7 NC_006548.1 + 27416 0.69 0.771678
Target:  5'- cGGAAaUGCUCGGUCAACugccgcuccugcucGGCCAGGCg -3'
miRNA:   3'- uCCUUcGUGGGUUAGUUG--------------UUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 18183 0.7 0.763974
Target:  5'- gGGGAugccAGUGCUCAGUCAGCGcCUAcGCg -3'
miRNA:   3'- -UCCU----UCGUGGGUUAGUUGUuGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 26944 0.7 0.763974
Target:  5'- uGGggGCucugUCCAGgacguaggCGACAagGCCGAGCa -3'
miRNA:   3'- uCCuuCGu---GGGUUa-------GUUGU--UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 29602 0.7 0.763974
Target:  5'- aGGGAGccGCAgCCAGUCuuGCGGCCGcgaaugGGCu -3'
miRNA:   3'- -UCCUU--CGUgGGUUAGu-UGUUGGU------UCG- -5'
30428 5' -48.7 NC_006548.1 + 4926 0.7 0.763974
Target:  5'- cGGAGGCACgcuUCGcgCAAUugcACCGAGCc -3'
miRNA:   3'- uCCUUCGUG---GGUuaGUUGu--UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 11069 0.7 0.752834
Target:  5'- uGGGggGUGCgCGA-CGGCAACCAucGGUc -3'
miRNA:   3'- -UCCuuCGUGgGUUaGUUGUUGGU--UCG- -5'
30428 5' -48.7 NC_006548.1 + 6701 0.7 0.752834
Target:  5'- uAGGAc-CACacaCGGUCAGCGGCCAcGCg -3'
miRNA:   3'- -UCCUucGUGg--GUUAGUUGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 27621 0.7 0.730135
Target:  5'- uGGAGGCAgCUAcgggGUCGGCGGCgaAGGCg -3'
miRNA:   3'- uCCUUCGUgGGU----UAGUUGUUGg-UUCG- -5'
30428 5' -48.7 NC_006548.1 + 1915 0.7 0.730135
Target:  5'- cGGccuGGUGCCCGAUCcccugguGCAGCCGcGCg -3'
miRNA:   3'- uCCu--UCGUGGGUUAGu------UGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 13821 0.7 0.730135
Target:  5'- cGGAcGUACUgGAUCGGCAGCUccGCc -3'
miRNA:   3'- uCCUuCGUGGgUUAGUUGUUGGuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.