miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 8139 0.7 0.717446
Target:  5'- -uGAGGCgcgcuucuacaugGCCCAGUCGGCAgaaGCCAuGCu -3'
miRNA:   3'- ucCUUCG-------------UGGGUUAGUUGU---UGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 8924 0.73 0.588203
Target:  5'- uGGucuGC-CCCAggugGUCGAUGGCCAGGCg -3'
miRNA:   3'- uCCuu-CGuGGGU----UAGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 9000 0.68 0.846179
Target:  5'- gGGGucGAGCGCCUGgccAUCGACcACCuggGGCa -3'
miRNA:   3'- -UCC--UUCGUGGGU---UAGUUGuUGGu--UCG- -5'
30428 5' -48.7 NC_006548.1 + 9519 0.68 0.836701
Target:  5'- cAGGAGGCugCUcugguGcgCGuCGGCCAGGUg -3'
miRNA:   3'- -UCCUUCGugGG-----UuaGUuGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 9576 0.72 0.611996
Target:  5'- aGGGgcGCACgCGAUCAguGC-AUCGAGCg -3'
miRNA:   3'- -UCCuuCGUGgGUUAGU--UGuUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 10844 0.67 0.864331
Target:  5'- -aGAAGUACCCAuUCAucagGCAauagGCCAGGa -3'
miRNA:   3'- ucCUUCGUGGGUuAGU----UGU----UGGUUCg -5'
30428 5' -48.7 NC_006548.1 + 10968 0.74 0.484409
Target:  5'- gAGGAAGCaACCUAGUCAGCAAaucaCAGa- -3'
miRNA:   3'- -UCCUUCG-UGGGUUAGUUGUUg---GUUcg -5'
30428 5' -48.7 NC_006548.1 + 11069 0.7 0.752834
Target:  5'- uGGGggGUGCgCGA-CGGCAACCAucGGUc -3'
miRNA:   3'- -UCCuuCGUGgGUUaGUUGUUGGU--UCG- -5'
30428 5' -48.7 NC_006548.1 + 11102 1.14 0.001218
Target:  5'- gAGGAAGCACCCAAUCAACAACCAAGCg -3'
miRNA:   3'- -UCCUUCGUGGGUUAGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 11983 0.77 0.38048
Target:  5'- gAGGAuGCAgCCCAggacgAUCAgcgagcggcGCAGCCAGGCa -3'
miRNA:   3'- -UCCUuCGU-GGGU-----UAGU---------UGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 12378 0.69 0.785761
Target:  5'- cAGGccGGCgAUCCAcUCAGCGguACCGGGCa -3'
miRNA:   3'- -UCCu-UCG-UGGGUuAGUUGU--UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 12630 0.71 0.682285
Target:  5'- cGGccGAGCGCCCGGcguugaagcgcUCGACGgaaucgaACCAGGCc -3'
miRNA:   3'- uCC--UUCGUGGGUU-----------AGUUGU-------UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 13189 0.71 0.683467
Target:  5'- cAGGAGcgaauCGCCCAuguAUCGACcgccuACCGAGCg -3'
miRNA:   3'- -UCCUUc----GUGGGU---UAGUUGu----UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 13347 0.69 0.785761
Target:  5'- ---cGGCGCUCAAaCAGCGACCuGGCc -3'
miRNA:   3'- uccuUCGUGGGUUaGUUGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 13821 0.7 0.730135
Target:  5'- cGGAcGUACUgGAUCGGCAGCUccGCc -3'
miRNA:   3'- uCCUuCGUGGgUUAGUUGUUGGuuCG- -5'
30428 5' -48.7 NC_006548.1 + 14030 0.71 0.682285
Target:  5'- gAGGAccggccccucguaGGCGCCCAc----CGGCCGAGCa -3'
miRNA:   3'- -UCCU-------------UCGUGGGUuaguuGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 14362 0.66 0.918502
Target:  5'- cGGGAAcuGCGCCUgcagguccgcGAUCAGCucguCCAGGg -3'
miRNA:   3'- -UCCUU--CGUGGG----------UUAGUUGuu--GGUUCg -5'
30428 5' -48.7 NC_006548.1 + 14717 0.66 0.90459
Target:  5'- gGGcGGAGUGaCCGA--GGCGACCAAGCa -3'
miRNA:   3'- -UC-CUUCGUgGGUUagUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 14751 0.73 0.588203
Target:  5'- cGGGAAGCGCUgggGAUCAACuGAUgAAGCg -3'
miRNA:   3'- -UCCUUCGUGGg--UUAGUUG-UUGgUUCG- -5'
30428 5' -48.7 NC_006548.1 + 15647 0.68 0.855393
Target:  5'- cGGGcuGCugCCAGUUAGCggUCu-GCg -3'
miRNA:   3'- -UCCuuCGugGGUUAGUUGuuGGuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.