miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 1051 0.66 0.918502
Target:  5'- uGGAA-CACCUccaugccauGUCGACGACCcAGCc -3'
miRNA:   3'- uCCUUcGUGGGu--------UAGUUGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 1078 0.67 0.872985
Target:  5'- uAGGggGCugcucagcaagAUCCAcaucgcucGUCAGCAGCUcGGCc -3'
miRNA:   3'- -UCCuuCG-----------UGGGU--------UAGUUGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 1915 0.7 0.730135
Target:  5'- cGGccuGGUGCCCGAUCcccugguGCAGCCGcGCg -3'
miRNA:   3'- uCCu--UCGUGGGUUAGu------UGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 1982 0.66 0.918502
Target:  5'- cGGcuGCACCagggGAUCGGgcACCAGGCc -3'
miRNA:   3'- uCCuuCGUGGg---UUAGUUguUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 2841 0.72 0.600084
Target:  5'- uGGAGGCACUCGucgAUCAGC-GCCuuGGCc -3'
miRNA:   3'- uCCUUCGUGGGU---UAGUUGuUGGu-UCG- -5'
30428 5' -48.7 NC_006548.1 + 2854 0.68 0.821015
Target:  5'- cGGAGGUcaucACgCUGAUCAACGaugcguuccgcguggACCAAGCu -3'
miRNA:   3'- uCCUUCG----UG-GGUUAGUUGU---------------UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 3839 0.66 0.924973
Target:  5'- cAGGAgcGGCGCgC--UCAGCAAUCA-GCa -3'
miRNA:   3'- -UCCU--UCGUGgGuuAGUUGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 4060 0.73 0.564583
Target:  5'- gGGGucGUccaGCCCAcAUCGACG-CCGAGCa -3'
miRNA:   3'- -UCCuuCG---UGGGU-UAGUUGUuGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 4506 0.66 0.92434
Target:  5'- uGGugcucAGGCGCUCGAUCAGCGccuggauGCCGcuuGCg -3'
miRNA:   3'- uCC-----UUCGUGGGUUAGUUGU-------UGGUu--CG- -5'
30428 5' -48.7 NC_006548.1 + 4644 0.66 0.90459
Target:  5'- uGGAaaAGCACCUggAGUUccgcuuCGGCCGGGCu -3'
miRNA:   3'- uCCU--UCGUGGG--UUAGuu----GUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 4849 0.73 0.588203
Target:  5'- gAGGAGGCACacagccugCCGAUCGccACGcUCAAGCa -3'
miRNA:   3'- -UCCUUCGUG--------GGUUAGU--UGUuGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 4926 0.7 0.763974
Target:  5'- cGGAGGCACgcuUCGcgCAAUugcACCGAGCc -3'
miRNA:   3'- uCCUUCGUG---GGUuaGUUGu--UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 5424 0.67 0.881345
Target:  5'- uGGGccauGGCGCgCAGUUugauGACGugcGCCAGGCa -3'
miRNA:   3'- -UCCu---UCGUGgGUUAG----UUGU---UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 5577 0.73 0.54122
Target:  5'- aAGGAAGUGCUUgccggGGUCAGCAAgacCCAGGCc -3'
miRNA:   3'- -UCCUUCGUGGG-----UUAGUUGUU---GGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 6496 0.66 0.931118
Target:  5'- cAGGGAGCAgCagagguucuUCGACAucGCCGAGa -3'
miRNA:   3'- -UCCUUCGUgGguu------AGUUGU--UGGUUCg -5'
30428 5' -48.7 NC_006548.1 + 6701 0.7 0.752834
Target:  5'- uAGGAc-CACacaCGGUCAGCGGCCAcGCg -3'
miRNA:   3'- -UCCUucGUGg--GUUAGUUGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 7278 0.75 0.441094
Target:  5'- ---uAGCugCCGGUCGAgguCAACCAGGCg -3'
miRNA:   3'- uccuUCGugGGUUAGUU---GUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 7368 0.75 0.42957
Target:  5'- aGGGcGGCcauaucggcccccACCCAGUCGggugccuggucGCGACCAAGCu -3'
miRNA:   3'- -UCCuUCG-------------UGGGUUAGU-----------UGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 7491 0.67 0.869558
Target:  5'- gAGGAGGUacgcaacgaguucgACCUgccugcagagcuuGGUC-GCGACCAGGCa -3'
miRNA:   3'- -UCCUUCG--------------UGGG-------------UUAGuUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 8091 0.66 0.931118
Target:  5'- cGGaAAGCGCCUGAUCGu--GCUgaaaGAGCa -3'
miRNA:   3'- uCC-UUCGUGGGUUAGUuguUGG----UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.