miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 11102 1.14 0.001218
Target:  5'- gAGGAAGCACCCAAUCAACAACCAAGCg -3'
miRNA:   3'- -UCCUUCGUGGGUUAGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 22554 0.8 0.23427
Target:  5'- cGGAGGagaGCCUGAUCGACGGCCAacuGGCc -3'
miRNA:   3'- uCCUUCg--UGGGUUAGUUGUUGGU---UCG- -5'
30428 5' -48.7 NC_006548.1 + 17270 0.77 0.361549
Target:  5'- gGGGAAGUuccACUCGGUCAGCcaacgGGCCGGGCc -3'
miRNA:   3'- -UCCUUCG---UGGGUUAGUUG-----UUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 23124 0.77 0.370932
Target:  5'- -cGAuuGCACCCAAcggCAGCAACUGAGCa -3'
miRNA:   3'- ucCUu-CGUGGGUUa--GUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 11983 0.77 0.38048
Target:  5'- gAGGAuGCAgCCCAggacgAUCAgcgagcggcGCAGCCAGGCa -3'
miRNA:   3'- -UCCUuCGU-GGGU-----UAGU---------UGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 7368 0.75 0.42957
Target:  5'- aGGGcGGCcauaucggcccccACCCAGUCGggugccuggucGCGACCAAGCu -3'
miRNA:   3'- -UCCuUCG-------------UGGGUUAGU-----------UGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 7278 0.75 0.441094
Target:  5'- ---uAGCugCCGGUCGAgguCAACCAGGCg -3'
miRNA:   3'- uccuUCGugGGUUAGUU---GUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 33645 0.75 0.461403
Target:  5'- cGGAcaacGGUGCCCAgcgcgcuGUCGAUcGCCAAGCg -3'
miRNA:   3'- uCCU----UCGUGGGU-------UAGUUGuUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 16449 0.75 0.462485
Target:  5'- uGGAAGCcggcggugaucGCCCGAUCG---ACCAGGCu -3'
miRNA:   3'- uCCUUCG-----------UGGGUUAGUuguUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 10968 0.74 0.484409
Target:  5'- gAGGAAGCaACCUAGUCAGCAAaucaCAGa- -3'
miRNA:   3'- -UCCUUCG-UGGGUUAGUUGUUg---GUUcg -5'
30428 5' -48.7 NC_006548.1 + 27242 0.74 0.502301
Target:  5'- gAGGcGGCAgCCAAggcugcugcugaAACAGCCAAGCa -3'
miRNA:   3'- -UCCuUCGUgGGUUag----------UUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 31263 0.74 0.518189
Target:  5'- cGGuuGCcgaaGCCCGGUCGGugaccCAGCCGAGCg -3'
miRNA:   3'- uCCuuCG----UGGGUUAGUU-----GUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 28690 0.74 0.529658
Target:  5'- aAGGAAGCggcgACCUAcggCAAgGGCCGGGCu -3'
miRNA:   3'- -UCCUUCG----UGGGUua-GUUgUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 5577 0.73 0.54122
Target:  5'- aAGGAAGUGCUUgccggGGUCAGCAAgacCCAGGCc -3'
miRNA:   3'- -UCCUUCGUGGG-----UUAGUUGUU---GGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 4060 0.73 0.564583
Target:  5'- gGGGucGUccaGCCCAcAUCGACG-CCGAGCa -3'
miRNA:   3'- -UCCuuCG---UGGGU-UAGUUGUuGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 4849 0.73 0.588203
Target:  5'- gAGGAGGCACacagccugCCGAUCGccACGcUCAAGCa -3'
miRNA:   3'- -UCCUUCGUG--------GGUUAGU--UGUuGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 14751 0.73 0.588203
Target:  5'- cGGGAAGCGCUgggGAUCAACuGAUgAAGCg -3'
miRNA:   3'- -UCCUUCGUGGg--UUAGUUG-UUGgUUCG- -5'
30428 5' -48.7 NC_006548.1 + 8924 0.73 0.588203
Target:  5'- uGGucuGC-CCCAggugGUCGAUGGCCAGGCg -3'
miRNA:   3'- uCCuu-CGuGGGU----UAGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 34995 0.72 0.600084
Target:  5'- cGGAGGCGagCAAUgGGCGGCCGuAGCa -3'
miRNA:   3'- uCCUUCGUggGUUAgUUGUUGGU-UCG- -5'
30428 5' -48.7 NC_006548.1 + 2841 0.72 0.600084
Target:  5'- uGGAGGCACUCGucgAUCAGC-GCCuuGGCc -3'
miRNA:   3'- uCCUUCGUGGGU---UAGUUGuUGGu-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.