miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 26944 0.7 0.763974
Target:  5'- uGGggGCucugUCCAGgacguaggCGACAagGCCGAGCa -3'
miRNA:   3'- uCCuuCGu---GGGUUa-------GUUGU--UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 9576 0.72 0.611996
Target:  5'- aGGGgcGCACgCGAUCAguGC-AUCGAGCg -3'
miRNA:   3'- -UCCuuCGUGgGUUAGU--UGuUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 37332 0.72 0.611996
Target:  5'- aAGGGGcgcgucgccacGCugCCGAcUAGCGGCCAGGCc -3'
miRNA:   3'- -UCCUU-----------CGugGGUUaGUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 13189 0.71 0.683467
Target:  5'- cAGGAGcgaauCGCCCAuguAUCGACcgccuACCGAGCg -3'
miRNA:   3'- -UCCUUc----GUGGGU---UAGUUGu----UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 1915 0.7 0.730135
Target:  5'- cGGccuGGUGCCCGAUCcccugguGCAGCCGcGCg -3'
miRNA:   3'- uCCu--UCGUGGGUUAGu------UGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 27621 0.7 0.730135
Target:  5'- uGGAGGCAgCUAcgggGUCGGCGGCgaAGGCg -3'
miRNA:   3'- uCCUUCGUgGGU----UAGUUGUUGg-UUCG- -5'
30428 5' -48.7 NC_006548.1 + 6701 0.7 0.752834
Target:  5'- uAGGAc-CACacaCGGUCAGCGGCCAcGCg -3'
miRNA:   3'- -UCCUucGUGg--GUUAGUUGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 11069 0.7 0.752834
Target:  5'- uGGGggGUGCgCGA-CGGCAACCAucGGUc -3'
miRNA:   3'- -UCCuuCGUGgGUUaGUUGUUGGU--UCG- -5'
30428 5' -48.7 NC_006548.1 + 18183 0.7 0.763974
Target:  5'- gGGGAugccAGUGCUCAGUCAGCGcCUAcGCg -3'
miRNA:   3'- -UCCU----UCGUGGGUUAGUUGUuGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 34995 0.72 0.600084
Target:  5'- cGGAGGCGagCAAUgGGCGGCCGuAGCa -3'
miRNA:   3'- uCCUUCGUggGUUAgUUGUUGGU-UCG- -5'
30428 5' -48.7 NC_006548.1 + 2841 0.72 0.600084
Target:  5'- uGGAGGCACUCGucgAUCAGC-GCCuuGGCc -3'
miRNA:   3'- uCCUUCGUGGGU---UAGUUGuUGGu-UCG- -5'
30428 5' -48.7 NC_006548.1 + 14751 0.73 0.588203
Target:  5'- cGGGAAGCGCUgggGAUCAACuGAUgAAGCg -3'
miRNA:   3'- -UCCUUCGUGGg--UUAGUUG-UUGgUUCG- -5'
30428 5' -48.7 NC_006548.1 + 7368 0.75 0.42957
Target:  5'- aGGGcGGCcauaucggcccccACCCAGUCGggugccuggucGCGACCAAGCu -3'
miRNA:   3'- -UCCuUCG-------------UGGGUUAGU-----------UGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 7278 0.75 0.441094
Target:  5'- ---uAGCugCCGGUCGAgguCAACCAGGCg -3'
miRNA:   3'- uccuUCGugGGUUAGUU---GUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 16449 0.75 0.462485
Target:  5'- uGGAAGCcggcggugaucGCCCGAUCG---ACCAGGCu -3'
miRNA:   3'- uCCUUCG-----------UGGGUUAGUuguUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 10968 0.74 0.484409
Target:  5'- gAGGAAGCaACCUAGUCAGCAAaucaCAGa- -3'
miRNA:   3'- -UCCUUCG-UGGGUUAGUUGUUg---GUUcg -5'
30428 5' -48.7 NC_006548.1 + 27242 0.74 0.502301
Target:  5'- gAGGcGGCAgCCAAggcugcugcugaAACAGCCAAGCa -3'
miRNA:   3'- -UCCuUCGUgGGUUag----------UUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 28690 0.74 0.529658
Target:  5'- aAGGAAGCggcgACCUAcggCAAgGGCCGGGCu -3'
miRNA:   3'- -UCCUUCG----UGGGUua-GUUgUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 4060 0.73 0.564583
Target:  5'- gGGGucGUccaGCCCAcAUCGACG-CCGAGCa -3'
miRNA:   3'- -UCCuuCG---UGGGU-UAGUUGUuGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 8924 0.73 0.588203
Target:  5'- uGGucuGC-CCCAggugGUCGAUGGCCAGGCg -3'
miRNA:   3'- uCCuu-CGuGGGU----UAGUUGUUGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.