Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 16257 | 0.68 | 0.564722 |
Target: 5'- aGAUCGccaCCAGUGGCgaCGGCCGCg-- -3' miRNA: 3'- gCUAGCua-GGUUAUCG--GCCGGUGgcg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 20873 | 0.68 | 0.564722 |
Target: 5'- cCGAgggCGAcggCCAGgucacaaAGCCGGCgGCCGa -3' miRNA: 3'- -GCUa--GCUa--GGUUa------UCGGCCGgUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 12135 | 0.67 | 0.575835 |
Target: 5'- cCGAUgaGAUCCc---GCgGGCCGCCGa -3' miRNA: 3'- -GCUAg-CUAGGuuauCGgCCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 22407 | 0.67 | 0.586997 |
Target: 5'- uGAcCGAcucaCCGAcacggacgcGCUGGCCACCGCg -3' miRNA: 3'- gCUaGCUa---GGUUau-------CGGCCGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 20782 | 0.67 | 0.586997 |
Target: 5'- ---cUGGUCaa--GGCCGGCCGCCuGCu -3' miRNA: 3'- gcuaGCUAGguuaUCGGCCGGUGG-CG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 19523 | 0.67 | 0.586997 |
Target: 5'- aGAUCGGacccuacacaaUCCAGaugccGGCuCGGCCAUgGCu -3' miRNA: 3'- gCUAGCU-----------AGGUUa----UCG-GCCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 11140 | 0.67 | 0.598198 |
Target: 5'- uGGUCGA-CCGAUGGuuG-CCGUCGCg -3' miRNA: 3'- gCUAGCUaGGUUAUCggCcGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 20687 | 0.67 | 0.598198 |
Target: 5'- aCGAgcgCGAg-CAAcuGCUGGCCACcCGCg -3' miRNA: 3'- -GCUa--GCUagGUUauCGGCCGGUG-GCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 18516 | 0.67 | 0.598198 |
Target: 5'- -aGUCGGUUUgAAUGGCggUGGCCACCGa -3' miRNA: 3'- gcUAGCUAGG-UUAUCG--GCCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 20391 | 0.67 | 0.609429 |
Target: 5'- gGAucUCGGUCag--AGCC-GUCACCGCg -3' miRNA: 3'- gCU--AGCUAGguuaUCGGcCGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 6942 | 0.67 | 0.620681 |
Target: 5'- -uAUUGGcgCCGG-AGCCGGUCACCGa -3' miRNA: 3'- gcUAGCUa-GGUUaUCGGCCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 12327 | 0.67 | 0.620681 |
Target: 5'- gGAUCGccggCCuGUAuCCGGCCGCCcucgGCa -3' miRNA: 3'- gCUAGCua--GGuUAUcGGCCGGUGG----CG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 22306 | 0.67 | 0.631944 |
Target: 5'- uCGAUcgcCGAUCCGAacaUCGGUCugCGCg -3' miRNA: 3'- -GCUA---GCUAGGUUaucGGCCGGugGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 5643 | 0.67 | 0.631944 |
Target: 5'- gGGUgGGUCUucuugAGCCaGGCCAUCGa -3' miRNA: 3'- gCUAgCUAGGuua--UCGG-CCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 22179 | 0.67 | 0.63645 |
Target: 5'- aGAUCGcGUCCAGUuccAGCagcuccugcaggaaGGCCAUCGg -3' miRNA: 3'- gCUAGC-UAGGUUA---UCGg-------------CCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 14282 | 0.66 | 0.639828 |
Target: 5'- gGAccUGGUCCGGUAGCCGGgagaucgaugauuuCCGCCcCa -3' miRNA: 3'- gCUa-GCUAGGUUAUCGGCC--------------GGUGGcG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 34730 | 0.66 | 0.643207 |
Target: 5'- gGAUCG-UCCucgGGaCCGGUCACgaGCg -3' miRNA: 3'- gCUAGCuAGGuuaUC-GGCCGGUGg-CG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 12601 | 0.66 | 0.654459 |
Target: 5'- aCGGaaUCGAaCCAGgccAGCUGGUCGgCGCc -3' miRNA: 3'- -GCU--AGCUaGGUUa--UCGGCCGGUgGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 32882 | 0.66 | 0.654459 |
Target: 5'- --cUCGA-CCGuuuGUGcGCCGGCCGCgGUg -3' miRNA: 3'- gcuAGCUaGGU---UAU-CGGCCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 34061 | 0.66 | 0.665689 |
Target: 5'- gGAUCGA-CgAGgugaacUGGCCGGCCgacaGCCGg -3' miRNA: 3'- gCUAGCUaGgUU------AUCGGCCGG----UGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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