miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30429 3' -54.6 NC_006548.1 + 11881 1.13 0.000445
Target:  5'- gCGAUCGAUCCAAUAGCCGGCCACCGCg -3'
miRNA:   3'- -GCUAGCUAGGUUAUCGGCCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 32373 0.74 0.235019
Target:  5'- aGAUCGAUcgcgaggacgCCGAUggcaucagccuGGCCGGCCAgCCGUc -3'
miRNA:   3'- gCUAGCUA----------GGUUA-----------UCGGCCGGU-GGCG- -5'
30429 3' -54.6 NC_006548.1 + 24248 0.73 0.268184
Target:  5'- gCGGUCGAaacCCAGgacgCGGCCACCGCc -3'
miRNA:   3'- -GCUAGCUa--GGUUaucgGCCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 36656 0.73 0.305026
Target:  5'- cCGcgCGAgcaCCGcgGuGCCGGCCGCgGCg -3'
miRNA:   3'- -GCuaGCUa--GGUuaU-CGGCCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 28969 0.71 0.362922
Target:  5'- --cUCGAUCUcGgcGCCGGCCGCCu- -3'
miRNA:   3'- gcuAGCUAGGuUauCGGCCGGUGGcg -5'
30429 3' -54.6 NC_006548.1 + 5568 0.7 0.408713
Target:  5'- aCGcgCaggCCAGgccgGGCCGGCUugCGCa -3'
miRNA:   3'- -GCuaGcuaGGUUa---UCGGCCGGugGCG- -5'
30429 3' -54.6 NC_006548.1 + 29412 0.7 0.408713
Target:  5'- gCGGUCag-CCGAUcGCUGGCCgacguuGCCGCg -3'
miRNA:   3'- -GCUAGcuaGGUUAuCGGCCGG------UGGCG- -5'
30429 3' -54.6 NC_006548.1 + 30589 0.7 0.418295
Target:  5'- ---aCGAUUUAcgAGUCGGCCGgCGCg -3'
miRNA:   3'- gcuaGCUAGGUuaUCGGCCGGUgGCG- -5'
30429 3' -54.6 NC_006548.1 + 33417 0.7 0.428013
Target:  5'- gGGUCGGaaUCCAGaucgcuuucuGCCGGCCAC-GCa -3'
miRNA:   3'- gCUAGCU--AGGUUau--------CGGCCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 15222 0.7 0.437862
Target:  5'- gGAUgCG-UCCGccgcgcuuGCCGGCCugCGCg -3'
miRNA:   3'- gCUA-GCuAGGUuau-----CGGCCGGugGCG- -5'
30429 3' -54.6 NC_006548.1 + 2222 0.69 0.456928
Target:  5'- -uGUCGcUCCAgcaccugguaggcGUAGCCGgucagcuccggcGCCGCCGCg -3'
miRNA:   3'- gcUAGCuAGGU-------------UAUCGGC------------CGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 17366 0.69 0.467139
Target:  5'- gGGUCGAaguugagUCCAcccaGGCCgaGGCCACgGCg -3'
miRNA:   3'- gCUAGCU-------AGGUua--UCGG--CCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 24588 0.69 0.51017
Target:  5'- uCGAgggCGAUCUGAaAGCCGGCgACuuCGUg -3'
miRNA:   3'- -GCUa--GCUAGGUUaUCGGCCGgUG--GCG- -5'
30429 3' -54.6 NC_006548.1 + 33757 0.69 0.51017
Target:  5'- gCGGUCGGUcgCCGAUGGCCaGGCgAUUaGCu -3'
miRNA:   3'- -GCUAGCUA--GGUUAUCGG-CCGgUGG-CG- -5'
30429 3' -54.6 NC_006548.1 + 36576 0.68 0.531758
Target:  5'- uCGAcgCGAUCaacgccgcGGCCGGC-ACCGCg -3'
miRNA:   3'- -GCUa-GCUAGguua----UCGGCCGgUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 568 0.68 0.54158
Target:  5'- --uUCGGcagcuguUCCA--GGCCGGCCGCCu- -3'
miRNA:   3'- gcuAGCU-------AGGUuaUCGGCCGGUGGcg -5'
30429 3' -54.6 NC_006548.1 + 29800 0.68 0.553666
Target:  5'- cCGAUCGGgaagucaucaUCC---GGgCGGCgGCCGCa -3'
miRNA:   3'- -GCUAGCU----------AGGuuaUCgGCCGgUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 29241 0.68 0.558081
Target:  5'- gCGAUCGAgcgcgugaaggaucUCCGccagcagcucgacaAUacccGGCUGGCCGCCGa -3'
miRNA:   3'- -GCUAGCU--------------AGGU--------------UA----UCGGCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 22566 0.68 0.564722
Target:  5'- uGAUCGAcggCCAAcUGGCCGGCguUCa- -3'
miRNA:   3'- gCUAGCUa--GGUU-AUCGGCCGguGGcg -5'
30429 3' -54.6 NC_006548.1 + 16257 0.68 0.564722
Target:  5'- aGAUCGccaCCAGUGGCgaCGGCCGCg-- -3'
miRNA:   3'- gCUAGCua-GGUUAUCG--GCCGGUGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.