miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30429 3' -54.6 NC_006548.1 + 568 0.68 0.54158
Target:  5'- --uUCGGcagcuguUCCA--GGCCGGCCGCCu- -3'
miRNA:   3'- gcuAGCU-------AGGUuaUCGGCCGGUGGcg -5'
30429 3' -54.6 NC_006548.1 + 2222 0.69 0.456928
Target:  5'- -uGUCGcUCCAgcaccugguaggcGUAGCCGgucagcuccggcGCCGCCGCg -3'
miRNA:   3'- gcUAGCuAGGU-------------UAUCGGC------------CGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 5568 0.7 0.408713
Target:  5'- aCGcgCaggCCAGgccgGGCCGGCUugCGCa -3'
miRNA:   3'- -GCuaGcuaGGUUa---UCGGCCGGugGCG- -5'
30429 3' -54.6 NC_006548.1 + 5643 0.67 0.631944
Target:  5'- gGGUgGGUCUucuugAGCCaGGCCAUCGa -3'
miRNA:   3'- gCUAgCUAGGuua--UCGG-CCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 6942 0.67 0.620681
Target:  5'- -uAUUGGcgCCGG-AGCCGGUCACCGa -3'
miRNA:   3'- gcUAGCUa-GGUUaUCGGCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 11140 0.67 0.598198
Target:  5'- uGGUCGA-CCGAUGGuuG-CCGUCGCg -3'
miRNA:   3'- gCUAGCUaGGUUAUCggCcGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 11881 1.13 0.000445
Target:  5'- gCGAUCGAUCCAAUAGCCGGCCACCGCg -3'
miRNA:   3'- -GCUAGCUAGGUUAUCGGCCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 12135 0.67 0.575835
Target:  5'- cCGAUgaGAUCCc---GCgGGCCGCCGa -3'
miRNA:   3'- -GCUAg-CUAGGuuauCGgCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 12327 0.67 0.620681
Target:  5'- gGAUCGccggCCuGUAuCCGGCCGCCcucgGCa -3'
miRNA:   3'- gCUAGCua--GGuUAUcGGCCGGUGG----CG- -5'
30429 3' -54.6 NC_006548.1 + 12601 0.66 0.654459
Target:  5'- aCGGaaUCGAaCCAGgccAGCUGGUCGgCGCc -3'
miRNA:   3'- -GCU--AGCUaGGUUa--UCGGCCGGUgGCG- -5'
30429 3' -54.6 NC_006548.1 + 13638 0.66 0.68804
Target:  5'- uGGUUGAg-CAGcAGCUuGCCGCCGCc -3'
miRNA:   3'- gCUAGCUagGUUaUCGGcCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 14282 0.66 0.639828
Target:  5'- gGAccUGGUCCGGUAGCCGGgagaucgaugauuuCCGCCcCa -3'
miRNA:   3'- gCUa-GCUAGGUUAUCGGCC--------------GGUGGcG- -5'
30429 3' -54.6 NC_006548.1 + 14340 0.66 0.68804
Target:  5'- gCGAUCagcucGUCCAGggucauCCGGCCAUCGg -3'
miRNA:   3'- -GCUAGc----UAGGUUauc---GGCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 15222 0.7 0.437862
Target:  5'- gGAUgCG-UCCGccgcgcuuGCCGGCCugCGCg -3'
miRNA:   3'- gCUA-GCuAGGUuau-----CGGCCGGugGCG- -5'
30429 3' -54.6 NC_006548.1 + 16257 0.68 0.564722
Target:  5'- aGAUCGccaCCAGUGGCgaCGGCCGCg-- -3'
miRNA:   3'- gCUAGCua-GGUUAUCG--GCCGGUGgcg -5'
30429 3' -54.6 NC_006548.1 + 17366 0.69 0.467139
Target:  5'- gGGUCGAaguugagUCCAcccaGGCCgaGGCCACgGCg -3'
miRNA:   3'- gCUAGCU-------AGGUua--UCGG--CCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 18516 0.67 0.598198
Target:  5'- -aGUCGGUUUgAAUGGCggUGGCCACCGa -3'
miRNA:   3'- gcUAGCUAGG-UUAUCG--GCCGGUGGCg -5'
30429 3' -54.6 NC_006548.1 + 19523 0.67 0.586997
Target:  5'- aGAUCGGacccuacacaaUCCAGaugccGGCuCGGCCAUgGCu -3'
miRNA:   3'- gCUAGCU-----------AGGUUa----UCG-GCCGGUGgCG- -5'
30429 3' -54.6 NC_006548.1 + 20391 0.67 0.609429
Target:  5'- gGAucUCGGUCag--AGCC-GUCACCGCg -3'
miRNA:   3'- gCU--AGCUAGguuaUCGGcCGGUGGCG- -5'
30429 3' -54.6 NC_006548.1 + 20687 0.67 0.598198
Target:  5'- aCGAgcgCGAg-CAAcuGCUGGCCACcCGCg -3'
miRNA:   3'- -GCUa--GCUagGUUauCGGCCGGUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.