miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30437 5' -55.2 NC_006548.1 + 29026 0.66 0.583588
Target:  5'- aGCGCCUucGGUGUC-AC-CCgugGCGAGCa -3'
miRNA:   3'- aUGCGGG--UUACAGcUGcGGa--CGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 33528 0.66 0.572289
Target:  5'- -cCGCCgCAuccUCGACGUCaGCGAGCu -3'
miRNA:   3'- auGCGG-GUuacAGCUGCGGaCGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 12847 0.66 0.572289
Target:  5'- aUACaGCUCAGgugccgGUaggaagucgCGACuGCCUGCGAACa -3'
miRNA:   3'- -AUG-CGGGUUa-----CA---------GCUG-CGGACGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 36778 0.67 0.53874
Target:  5'- cGCGCCg---GUCGACuCgCUGCGAAUg -3'
miRNA:   3'- aUGCGGguuaCAGCUGcG-GACGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 27276 0.67 0.53874
Target:  5'- aGCGCgUugcucgGUCGcCGCCUGCuGGACg -3'
miRNA:   3'- aUGCGgGuua---CAGCuGCGGACG-CUUG- -5'
30437 5' -55.2 NC_006548.1 + 12575 0.67 0.53874
Target:  5'- gGCGCCgGAUGcCGAgGCCaGCuuACg -3'
miRNA:   3'- aUGCGGgUUACaGCUgCGGaCGcuUG- -5'
30437 5' -55.2 NC_006548.1 + 26403 0.67 0.51675
Target:  5'- uUGCGCCUGGaagaaacacUGUCGGCGgcucaCCUGCGGc- -3'
miRNA:   3'- -AUGCGGGUU---------ACAGCUGC-----GGACGCUug -5'
30437 5' -55.2 NC_006548.1 + 23653 0.68 0.473926
Target:  5'- --aGUCCuucagGGUGUCGugGCUgaaggUGCGAGCg -3'
miRNA:   3'- augCGGG-----UUACAGCugCGG-----ACGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 4059 0.69 0.384776
Target:  5'- gUACaCCCcgcugaugGAUGUUGACGCCaugaGCGAGCa -3'
miRNA:   3'- -AUGcGGG--------UUACAGCUGCGGa---CGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 7007 0.7 0.375574
Target:  5'- -cCGCCCGAUGUCGAUcagcgcgaucaGCC-GCGcGCu -3'
miRNA:   3'- auGCGGGUUACAGCUG-----------CGGaCGCuUG- -5'
30437 5' -55.2 NC_006548.1 + 15701 0.7 0.366522
Target:  5'- aUACGCgCCAc-GUCGAgCGUCUGCaGAACa -3'
miRNA:   3'- -AUGCG-GGUuaCAGCU-GCGGACG-CUUG- -5'
30437 5' -55.2 NC_006548.1 + 32963 0.71 0.315426
Target:  5'- cGCGCCCGGUGcagCGGCGCUgGCcGGCc -3'
miRNA:   3'- aUGCGGGUUACa--GCUGCGGaCGcUUG- -5'
30437 5' -55.2 NC_006548.1 + 14506 0.71 0.315426
Target:  5'- gUGCGUCCAGgucGUCGcCGCCUGgGcACg -3'
miRNA:   3'- -AUGCGGGUUa--CAGCuGCGGACgCuUG- -5'
30437 5' -55.2 NC_006548.1 + 7779 0.71 0.307452
Target:  5'- aUGCGCUCGAUgucgucuagGUCGAgGCCUGC-AACu -3'
miRNA:   3'- -AUGCGGGUUA---------CAGCUgCGGACGcUUG- -5'
30437 5' -55.2 NC_006548.1 + 2053 0.73 0.229186
Target:  5'- gUACGCCUggaucgcgucggcGAUguugucGUCGACGCCcGCGAACu -3'
miRNA:   3'- -AUGCGGG-------------UUA------CAGCUGCGGaCGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 6288 0.73 0.223638
Target:  5'- gGCGCCCAcgGUCGAguugUGCC-GgGAGCu -3'
miRNA:   3'- aUGCGGGUuaCAGCU----GCGGaCgCUUG- -5'
30437 5' -55.2 NC_006548.1 + 21337 0.73 0.217609
Target:  5'- aUGCGCUgAcgGcCGACGCCcagggGCGAGCg -3'
miRNA:   3'- -AUGCGGgUuaCaGCUGCGGa----CGCUUG- -5'
30437 5' -55.2 NC_006548.1 + 15687 1.09 0.000595
Target:  5'- uUACGCCCAAUGUCGACGCCUGCGAACa -3'
miRNA:   3'- -AUGCGGGUUACAGCUGCGGACGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.