Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 7937 | 0.72 | 0.095073 |
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Target: 5'- -gAGCgCCGCCUGCAUcauCCGGCGcGCu -3' miRNA: 3'- cgUCGaGGCGGACGUAc--GGCCGCcCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 29648 | 0.72 | 0.095073 |
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Target: 5'- uGguGCcgCUGCCaGCgGUGCCGGUGcGGCa -3' miRNA: 3'- -CguCGa-GGCGGaCG-UACGGCCGC-CCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 3822 | 0.73 | 0.07296 |
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Target: 5'- uGCAGCUCCGCaUGCAgcuuggagaagugGCCGGCGa-- -3' miRNA: 3'- -CGUCGAGGCGgACGUa------------CGGCCGCccg -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 7608 | 0.75 | 0.053947 |
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Target: 5'- cGCAGCUCUGCC-GCGcGCUGGUcGGCc -3' miRNA: 3'- -CGUCGAGGCGGaCGUaCGGCCGcCCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 23800 | 0.76 | 0.050943 |
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Target: 5'- -aAGC-CCGCCgGcCAUGCCGGUGGcGCg -3' miRNA: 3'- cgUCGaGGCGGaC-GUACGGCCGCC-CG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 37398 | 0.76 | 0.049503 |
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Target: 5'- aGCGGCUcaaaucagaaCCGCCUaGCucGCUGGUGGGCa -3' miRNA: 3'- -CGUCGA----------GGCGGA-CGuaCGGCCGCCCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 23869 | 0.78 | 0.035036 |
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Target: 5'- cCGGgUCgCGCCaccgGCAUgGCCGGCGGGCu -3' miRNA: 3'- cGUCgAG-GCGGa---CGUA-CGGCCGCCCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 17035 | 1.13 | 0.000055 |
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Target: 5'- aGCAGCUCCGCCUGCAUGCCGGCGGGCa -3' miRNA: 3'- -CGUCGAGGCGGACGUACGGCCGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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