Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30441 | 3' | -62.6 | NC_006548.1 | + | 22684 | 0.69 | 0.160329 |
Target: 5'- cGCAGUUCCGCUuccgGCAguUCGGCGaGCg -3' miRNA: 3'- -CGUCGAGGCGGa---CGUacGGCCGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 21824 | 0.68 | 0.188193 |
Target: 5'- cGguGCguugucgauaUCCGCCUGCGgcaCCGGCGcguccaGGCc -3' miRNA: 3'- -CguCG----------AGGCGGACGUac-GGCCGC------CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 21244 | 0.67 | 0.224258 |
Target: 5'- gGCGGCcaggCCGuCCgaGC-UGCCauggaucacgauacGGCGGGCg -3' miRNA: 3'- -CGUCGa---GGC-GGa-CGuACGG--------------CCGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20789 | 0.67 | 0.214586 |
Target: 5'- -aGGCcggCCGCCUGC-UGCCGcGCcagaaGGCu -3' miRNA: 3'- cgUCGa--GGCGGACGuACGGC-CGc----CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20526 | 0.66 | 0.250382 |
Target: 5'- aGCAGCcucugCCGCCgcUGCGgaagaGCCG-CaGGGCa -3' miRNA: 3'- -CGUCGa----GGCGG--ACGUa----CGGCcG-CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20134 | 0.67 | 0.220231 |
Target: 5'- uGCGGCUCgGCauagaGCAUGCCGuCGcGCa -3' miRNA: 3'- -CGUCGAGgCGga---CGUACGGCcGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 18790 | 0.67 | 0.231902 |
Target: 5'- aGCAGCaCgGCCUGCG-GCUgGGCGaGGa -3' miRNA: 3'- -CGUCGaGgCGGACGUaCGG-CCGC-CCg -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 17767 | 0.67 | 0.237931 |
Target: 5'- aGgAGagUCCGCC-GUAUGCgGcGCGGGUg -3' miRNA: 3'- -CgUCg-AGGCGGaCGUACGgC-CGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 17035 | 1.13 | 0.000055 |
Target: 5'- aGCAGCUCCGCCUGCAUGCCGGCGGGCa -3' miRNA: 3'- -CGUCGAGGCGGACGUACGGCCGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 16970 | 0.71 | 0.112365 |
Target: 5'- --uGC-CCGCCgGCAUGCaGGCGGaGCu -3' miRNA: 3'- cguCGaGGCGGaCGUACGgCCGCC-CG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 16534 | 0.69 | 0.156063 |
Target: 5'- aGguGCUCUGCC-GCA-GCCuGGUcgaucGGGCg -3' miRNA: 3'- -CguCGAGGCGGaCGUaCGG-CCG-----CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 16183 | 0.7 | 0.125484 |
Target: 5'- -gAGCUgCGUCcGUGUGCCGGCGGa- -3' miRNA: 3'- cgUCGAgGCGGaCGUACGGCCGCCcg -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 14433 | 0.66 | 0.261383 |
Target: 5'- cGCcGCUCCaGCUucuggccguagcgaUGCAcggcUGCaCGGCuGGGCa -3' miRNA: 3'- -CGuCGAGG-CGG--------------ACGU----ACG-GCCG-CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 14314 | 0.68 | 0.203666 |
Target: 5'- cGCAGUUCCcgaGCCagGCcgaaGCCGGCGaGCu -3' miRNA: 3'- -CGUCGAGG---CGGa-CGua--CGGCCGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 12159 | 0.68 | 0.178461 |
Target: 5'- aGCAGUaUCGCC-GCGUGCUGGUucgaGcGGCg -3' miRNA: 3'- -CGUCGaGGCGGaCGUACGGCCG----C-CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 11771 | 0.67 | 0.220231 |
Target: 5'- aGCAGCUCCaggucguuGCCUaCAaGCUGGUccuggugaccuuGGGCg -3' miRNA: 3'- -CGUCGAGG--------CGGAcGUaCGGCCG------------CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 8789 | 0.66 | 0.250382 |
Target: 5'- aGCAGUUgcagaCCGuCCUGCAUgacGCCGuugGGGCg -3' miRNA: 3'- -CGUCGA-----GGC-GGACGUA---CGGCcg-CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 7937 | 0.72 | 0.095073 |
Target: 5'- -gAGCgCCGCCUGCAUcauCCGGCGcGCu -3' miRNA: 3'- cgUCGaGGCGGACGUAc--GGCCGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 7608 | 0.75 | 0.053947 |
Target: 5'- cGCAGCUCUGCC-GCGcGCUGGUcGGCc -3' miRNA: 3'- -CGUCGAGGCGGaCGUaCGGCCGcCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 7124 | 0.66 | 0.256806 |
Target: 5'- gGCGGCUCUGCCccgaguccuUGC--GCCGcuuacGCGGuGCg -3' miRNA: 3'- -CGUCGAGGCGG---------ACGuaCGGC-----CGCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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