Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 27909 | 0.66 | 0.250382 |
|
Target: 5'- uGCAGCUCgGCCagcGCGUucCCGGCGcGUu -3' miRNA: 3'- -CGUCGAGgCGGa--CGUAc-GGCCGCcCG- -5' |
|||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 20526 | 0.66 | 0.250382 |
|
Target: 5'- aGCAGCcucugCCGCCgcUGCGgaagaGCCG-CaGGGCa -3' miRNA: 3'- -CGUCGa----GGCGG--ACGUa----CGGCcG-CCCG- -5' |
|||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 24439 | 0.66 | 0.244091 |
|
Target: 5'- -gGGCaaCCGCCUGCAauaugGCCGcuugcaGCGcGGCa -3' miRNA: 3'- cgUCGa-GGCGGACGUa----CGGC------CGC-CCG- -5' |
|||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 33419 | 0.67 | 0.237931 |
|
Target: 5'- cCAGCUCCGUCcucgaUGuCGaGCUGGuUGGGCu -3' miRNA: 3'- cGUCGAGGCGG-----AC-GUaCGGCC-GCCCG- -5' |
|||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 11771 | 0.67 | 0.220231 |
|
Target: 5'- aGCAGCUCCaggucguuGCCUaCAaGCUGGUccuggugaccuuGGGCg -3' miRNA: 3'- -CGUCGAGG--------CGGAcGUaCGGCCG------------CCCG- -5' |
|||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 2409 | 0.67 | 0.220231 |
|
Target: 5'- -uGGCUUCGCCaGcCAUGCUGGCcaGCa -3' miRNA: 3'- cgUCGAGGCGGaC-GUACGGCCGccCG- -5' |
|||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 20789 | 0.67 | 0.214586 |
|
Target: 5'- -aGGCcggCCGCCUGC-UGCCGcGCcagaaGGCu -3' miRNA: 3'- cgUCGa--GGCGGACGuACGGC-CGc----CCG- -5' |
|||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 37398 | 0.76 | 0.049503 |
|
Target: 5'- aGCGGCUcaaaucagaaCCGCCUaGCucGCUGGUGGGCa -3' miRNA: 3'- -CGUCGA----------GGCGGA-CGuaCGGCCGCCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home