miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30441 3' -62.6 NC_006548.1 + 571 0.66 0.244091
Target:  5'- gGCAGCUguuccaggccggCCGCCUGUucuggaugcucgAUGCCcaGGCccuGGCa -3'
miRNA:   3'- -CGUCGA------------GGCGGACG------------UACGG--CCGc--CCG- -5'
30441 3' -62.6 NC_006548.1 + 20789 0.67 0.214586
Target:  5'- -aGGCcggCCGCCUGC-UGCCGcGCcagaaGGCu -3'
miRNA:   3'- cgUCGa--GGCGGACGuACGGC-CGc----CCG- -5'
30441 3' -62.6 NC_006548.1 + 37398 0.76 0.049503
Target:  5'- aGCGGCUcaaaucagaaCCGCCUaGCucGCUGGUGGGCa -3'
miRNA:   3'- -CGUCGA----------GGCGGA-CGuaCGGCCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 7937 0.72 0.095073
Target:  5'- -gAGCgCCGCCUGCAUcauCCGGCGcGCu -3'
miRNA:   3'- cgUCGaGGCGGACGUAc--GGCCGCcCG- -5'
30441 3' -62.6 NC_006548.1 + 29648 0.72 0.095073
Target:  5'- uGguGCcgCUGCCaGCgGUGCCGGUGcGGCa -3'
miRNA:   3'- -CguCGa-GGCGGaCG-UACGGCCGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 16970 0.71 0.112365
Target:  5'- --uGC-CCGCCgGCAUGCaGGCGGaGCu -3'
miRNA:   3'- cguCGaGGCGGaCGUACGgCCGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 3822 0.73 0.07296
Target:  5'- uGCAGCUCCGCaUGCAgcuuggagaagugGCCGGCGa-- -3'
miRNA:   3'- -CGUCGAGGCGgACGUa------------CGGCCGCccg -5'
30441 3' -62.6 NC_006548.1 + 2409 0.67 0.220231
Target:  5'- -uGGCUUCGCCaGcCAUGCUGGCcaGCa -3'
miRNA:   3'- cgUCGAGGCGGaC-GUACGGCCGccCG- -5'
30441 3' -62.6 NC_006548.1 + 11771 0.67 0.220231
Target:  5'- aGCAGCUCCaggucguuGCCUaCAaGCUGGUccuggugaccuuGGGCg -3'
miRNA:   3'- -CGUCGAGG--------CGGAcGUaCGGCCG------------CCCG- -5'
30441 3' -62.6 NC_006548.1 + 33419 0.67 0.237931
Target:  5'- cCAGCUCCGUCcucgaUGuCGaGCUGGuUGGGCu -3'
miRNA:   3'- cGUCGAGGCGG-----AC-GUaCGGCC-GCCCG- -5'
30441 3' -62.6 NC_006548.1 + 23800 0.76 0.050943
Target:  5'- -aAGC-CCGCCgGcCAUGCCGGUGGcGCg -3'
miRNA:   3'- cgUCGaGGCGGaC-GUACGGCCGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 24439 0.66 0.244091
Target:  5'- -gGGCaaCCGCCUGCAauaugGCCGcuugcaGCGcGGCa -3'
miRNA:   3'- cgUCGa-GGCGGACGUa----CGGC------CGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 20526 0.66 0.250382
Target:  5'- aGCAGCcucugCCGCCgcUGCGgaagaGCCG-CaGGGCa -3'
miRNA:   3'- -CGUCGa----GGCGG--ACGUa----CGGCcG-CCCG- -5'
30441 3' -62.6 NC_006548.1 + 27909 0.66 0.250382
Target:  5'- uGCAGCUCgGCCagcGCGUucCCGGCGcGUu -3'
miRNA:   3'- -CGUCGAGgCGGa--CGUAc-GGCCGCcCG- -5'
30441 3' -62.6 NC_006548.1 + 7124 0.66 0.256806
Target:  5'- gGCGGCUCUGCCccgaguccuUGC--GCCGcuuacGCGGuGCg -3'
miRNA:   3'- -CGUCGAGGCGG---------ACGuaCGGC-----CGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 1195 0.66 0.263365
Target:  5'- cCAGgagCCGgCUGCAaaGCCGGUacGGGCg -3'
miRNA:   3'- cGUCga-GGCgGACGUa-CGGCCG--CCCG- -5'
30441 3' -62.6 NC_006548.1 + 1243 0.66 0.270059
Target:  5'- uCGGuCUuuGCUUGCGcGCgCGGUGcGGCa -3'
miRNA:   3'- cGUC-GAggCGGACGUaCG-GCCGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 27974 0.66 0.27689
Target:  5'- aGCAGCUCaGCgaGUG-GCUGGaaaaGGGCc -3'
miRNA:   3'- -CGUCGAGgCGgaCGUaCGGCCg---CCCG- -5'
30441 3' -62.6 NC_006548.1 + 22768 0.66 0.27689
Target:  5'- aGCGGCggagUCGCCuuUGCGgaucGCCgacgaGGCcGGGCg -3'
miRNA:   3'- -CGUCGa---GGCGG--ACGUa---CGG-----CCG-CCCG- -5'
30441 3' -62.6 NC_006548.1 + 27525 0.66 0.27689
Target:  5'- gGCuGCUguUCGCCgGCAUcGCCGGUuacGGCc -3'
miRNA:   3'- -CGuCGA--GGCGGaCGUA-CGGCCGc--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.