miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30441 3' -62.6 NC_006548.1 + 20526 0.66 0.250382
Target:  5'- aGCAGCcucugCCGCCgcUGCGgaagaGCCG-CaGGGCa -3'
miRNA:   3'- -CGUCGa----GGCGG--ACGUa----CGGCcG-CCCG- -5'
30441 3' -62.6 NC_006548.1 + 22698 0.68 0.192723
Target:  5'- aGCAGCUCguCGCUgccauucagGCgcagaaggugcucGUGCCGGCcGGCg -3'
miRNA:   3'- -CGUCGAG--GCGGa--------CG-------------UACGGCCGcCCG- -5'
30441 3' -62.6 NC_006548.1 + 14314 0.68 0.203666
Target:  5'- cGCAGUUCCcgaGCCagGCcgaaGCCGGCGaGCu -3'
miRNA:   3'- -CGUCGAGG---CGGa-CGua--CGGCCGCcCG- -5'
30441 3' -62.6 NC_006548.1 + 20789 0.67 0.214586
Target:  5'- -aGGCcggCCGCCUGC-UGCCGcGCcagaaGGCu -3'
miRNA:   3'- cgUCGa--GGCGGACGuACGGC-CGc----CCG- -5'
30441 3' -62.6 NC_006548.1 + 2409 0.67 0.220231
Target:  5'- -uGGCUUCGCCaGcCAUGCUGGCcaGCa -3'
miRNA:   3'- cgUCGAGGCGGaC-GUACGGCCGccCG- -5'
30441 3' -62.6 NC_006548.1 + 11771 0.67 0.220231
Target:  5'- aGCAGCUCCaggucguuGCCUaCAaGCUGGUccuggugaccuuGGGCg -3'
miRNA:   3'- -CGUCGAGG--------CGGAcGUaCGGCCG------------CCCG- -5'
30441 3' -62.6 NC_006548.1 + 33419 0.67 0.237931
Target:  5'- cCAGCUCCGUCcucgaUGuCGaGCUGGuUGGGCu -3'
miRNA:   3'- cGUCGAGGCGG-----AC-GUaCGGCC-GCCCG- -5'
30441 3' -62.6 NC_006548.1 + 571 0.66 0.244091
Target:  5'- gGCAGCUguuccaggccggCCGCCUGUucuggaugcucgAUGCCcaGGCccuGGCa -3'
miRNA:   3'- -CGUCGA------------GGCGGACG------------UACGG--CCGc--CCG- -5'
30441 3' -62.6 NC_006548.1 + 24439 0.66 0.244091
Target:  5'- -gGGCaaCCGCCUGCAauaugGCCGcuugcaGCGcGGCa -3'
miRNA:   3'- cgUCGa-GGCGGACGUa----CGGC------CGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 12159 0.68 0.178461
Target:  5'- aGCAGUaUCGCC-GCGUGCUGGUucgaGcGGCg -3'
miRNA:   3'- -CGUCGaGGCGGaCGUACGGCCG----C-CCG- -5'
30441 3' -62.6 NC_006548.1 + 791 0.69 0.1519
Target:  5'- cCAGCUgCGCCUcgAUGaccuggaccUCGGCGGGCa -3'
miRNA:   3'- cGUCGAgGCGGAcgUAC---------GGCCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 38223 0.7 0.143876
Target:  5'- aGCAGCUCgGCCgauucuUGCgGGaGGGCa -3'
miRNA:   3'- -CGUCGAGgCGGacgu--ACGgCCgCCCG- -5'
30441 3' -62.6 NC_006548.1 + 23800 0.76 0.050943
Target:  5'- -aAGC-CCGCCgGcCAUGCCGGUGGcGCg -3'
miRNA:   3'- cgUCGaGGCGGaC-GUACGGCCGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 7608 0.75 0.053947
Target:  5'- cGCAGCUCUGCC-GCGcGCUGGUcGGCc -3'
miRNA:   3'- -CGUCGAGGCGGaCGUaCGGCCGcCCG- -5'
30441 3' -62.6 NC_006548.1 + 3822 0.73 0.07296
Target:  5'- uGCAGCUCCGCaUGCAgcuuggagaagugGCCGGCGa-- -3'
miRNA:   3'- -CGUCGAGGCGgACGUa------------CGGCCGCccg -5'
30441 3' -62.6 NC_006548.1 + 7937 0.72 0.095073
Target:  5'- -gAGCgCCGCCUGCAUcauCCGGCGcGCu -3'
miRNA:   3'- cgUCGaGGCGGACGUAc--GGCCGCcCG- -5'
30441 3' -62.6 NC_006548.1 + 29648 0.72 0.095073
Target:  5'- uGguGCcgCUGCCaGCgGUGCCGGUGcGGCa -3'
miRNA:   3'- -CguCGa-GGCGGaCG-UACGGCCGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 16970 0.71 0.112365
Target:  5'- --uGC-CCGCCgGCAUGCaGGCGGaGCu -3'
miRNA:   3'- cguCGaGGCGGaCGUACGgCCGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 32729 0.71 0.112365
Target:  5'- cGCGuGCUCCucgaccucaGCCuUGCAgGCUggGGCGGGCg -3'
miRNA:   3'- -CGU-CGAGG---------CGG-ACGUaCGG--CCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 25856 0.71 0.122077
Target:  5'- gGCGGaugucaCCGCCUGCuggcCCGcGCGGGCc -3'
miRNA:   3'- -CGUCga----GGCGGACGuac-GGC-CGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.