miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30441 3' -62.6 NC_006548.1 + 571 0.66 0.244091
Target:  5'- gGCAGCUguuccaggccggCCGCCUGUucuggaugcucgAUGCCcaGGCccuGGCa -3'
miRNA:   3'- -CGUCGA------------GGCGGACG------------UACGG--CCGc--CCG- -5'
30441 3' -62.6 NC_006548.1 + 791 0.69 0.1519
Target:  5'- cCAGCUgCGCCUcgAUGaccuggaccUCGGCGGGCa -3'
miRNA:   3'- cGUCGAgGCGGAcgUAC---------GGCCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 1043 0.66 0.256806
Target:  5'- aGCAGCUCgGCCUGCAggacgaUGUcuauCGGCaGaaGCu -3'
miRNA:   3'- -CGUCGAGgCGGACGU------ACG----GCCGcC--CG- -5'
30441 3' -62.6 NC_006548.1 + 1195 0.66 0.263365
Target:  5'- cCAGgagCCGgCUGCAaaGCCGGUacGGGCg -3'
miRNA:   3'- cGUCga-GGCgGACGUa-CGGCCG--CCCG- -5'
30441 3' -62.6 NC_006548.1 + 1243 0.66 0.270059
Target:  5'- uCGGuCUuuGCUUGCGcGCgCGGUGcGGCa -3'
miRNA:   3'- cGUC-GAggCGGACGUaCG-GCCGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 1452 0.69 0.173764
Target:  5'- aGCAGUUCCug--GCcgG-CGGCGGGCa -3'
miRNA:   3'- -CGUCGAGGcggaCGuaCgGCCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 2409 0.67 0.220231
Target:  5'- -uGGCUUCGCCaGcCAUGCUGGCcaGCa -3'
miRNA:   3'- cgUCGAGGCGGaC-GUACGGCCGccCG- -5'
30441 3' -62.6 NC_006548.1 + 3822 0.73 0.07296
Target:  5'- uGCAGCUCCGCaUGCAgcuuggagaagugGCCGGCGa-- -3'
miRNA:   3'- -CGUCGAGGCGgACGUa------------CGGCCGCccg -5'
30441 3' -62.6 NC_006548.1 + 7124 0.66 0.256806
Target:  5'- gGCGGCUCUGCCccgaguccuUGC--GCCGcuuacGCGGuGCg -3'
miRNA:   3'- -CGUCGAGGCGG---------ACGuaCGGC-----CGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 7608 0.75 0.053947
Target:  5'- cGCAGCUCUGCC-GCGcGCUGGUcGGCc -3'
miRNA:   3'- -CGUCGAGGCGGaCGUaCGGCCGcCCG- -5'
30441 3' -62.6 NC_006548.1 + 7937 0.72 0.095073
Target:  5'- -gAGCgCCGCCUGCAUcauCCGGCGcGCu -3'
miRNA:   3'- cgUCGaGGCGGACGUAc--GGCCGCcCG- -5'
30441 3' -62.6 NC_006548.1 + 8789 0.66 0.250382
Target:  5'- aGCAGUUgcagaCCGuCCUGCAUgacGCCGuugGGGCg -3'
miRNA:   3'- -CGUCGA-----GGC-GGACGUA---CGGCcg-CCCG- -5'
30441 3' -62.6 NC_006548.1 + 11771 0.67 0.220231
Target:  5'- aGCAGCUCCaggucguuGCCUaCAaGCUGGUccuggugaccuuGGGCg -3'
miRNA:   3'- -CGUCGAGG--------CGGAcGUaCGGCCG------------CCCG- -5'
30441 3' -62.6 NC_006548.1 + 12159 0.68 0.178461
Target:  5'- aGCAGUaUCGCC-GCGUGCUGGUucgaGcGGCg -3'
miRNA:   3'- -CGUCGaGGCGGaCGUACGGCCG----C-CCG- -5'
30441 3' -62.6 NC_006548.1 + 14314 0.68 0.203666
Target:  5'- cGCAGUUCCcgaGCCagGCcgaaGCCGGCGaGCu -3'
miRNA:   3'- -CGUCGAGG---CGGa-CGua--CGGCCGCcCG- -5'
30441 3' -62.6 NC_006548.1 + 14433 0.66 0.261383
Target:  5'- cGCcGCUCCaGCUucuggccguagcgaUGCAcggcUGCaCGGCuGGGCa -3'
miRNA:   3'- -CGuCGAGG-CGG--------------ACGU----ACG-GCCG-CCCG- -5'
30441 3' -62.6 NC_006548.1 + 16183 0.7 0.125484
Target:  5'- -gAGCUgCGUCcGUGUGCCGGCGGa- -3'
miRNA:   3'- cgUCGAgGCGGaCGUACGGCCGCCcg -5'
30441 3' -62.6 NC_006548.1 + 16534 0.69 0.156063
Target:  5'- aGguGCUCUGCC-GCA-GCCuGGUcgaucGGGCg -3'
miRNA:   3'- -CguCGAGGCGGaCGUaCGG-CCG-----CCCG- -5'
30441 3' -62.6 NC_006548.1 + 16970 0.71 0.112365
Target:  5'- --uGC-CCGCCgGCAUGCaGGCGGaGCu -3'
miRNA:   3'- cguCGaGGCGGaCGUACGgCCGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 17035 1.13 5.5e-05
Target:  5'- aGCAGCUCCGCCUGCAUGCCGGCGGGCa -3'
miRNA:   3'- -CGUCGAGGCGGACGUACGGCCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.