Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 29482 | 0.67 | 0.76135 |
|
Target: 5'- gCGcGGC-AACGUCGGCCaGCG-AUCg -3' miRNA: 3'- aGUuCCGcUUGUAGCCGGaCGUuUAG- -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 6845 | 0.67 | 0.76135 |
|
Target: 5'- -uGGGGCGAACAagaaggcuagCGGCCUaCAGGUg -3' miRNA: 3'- agUUCCGCUUGUa---------GCCGGAcGUUUAg -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 24524 | 0.67 | 0.793483 |
|
Target: 5'- aUCGcuguGGCGAuc-UgGGCCUcGCAGAUCg -3' miRNA: 3'- -AGUu---CCGCUuguAgCCGGA-CGUUUAG- -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 22153 | 0.67 | 0.793483 |
|
Target: 5'- gCGcGGCuGAACAucgcUCGGCCgggGCAGAa- -3' miRNA: 3'- aGUuCCG-CUUGU----AGCCGGa--CGUUUag -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 20437 | 0.66 | 0.803825 |
|
Target: 5'- aUCGAGGaGGACGcgCGGCgaGCAG-UCa -3' miRNA: 3'- -AGUUCCgCUUGUa-GCCGgaCGUUuAG- -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 15814 | 0.66 | 0.807905 |
|
Target: 5'- aUCGgcuGGGCGGACGacgcucaggaccaguUCGGCgaGCAccguGUCg -3' miRNA: 3'- -AGU---UCCGCUUGU---------------AGCCGgaCGUu---UAG- -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 22297 | 0.66 | 0.813962 |
|
Target: 5'- cCGuuGCGggUGUCGGCCagGCG-AUCg -3' miRNA: 3'- aGUucCGCuuGUAGCCGGa-CGUuUAG- -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 29009 | 0.66 | 0.833564 |
|
Target: 5'- cCGuGGCGAGCAgacGCuuCUGCAGGUCg -3' miRNA: 3'- aGUuCCGCUUGUagcCG--GACGUUUAG- -5' |
|||||||
| 30442 | 5' | -50.8 | NC_006548.1 | + | 19283 | 0.66 | 0.843007 |
|
Target: 5'- cCAAGGCGugcCGUCaggcgauaccugGGCCUG-GAAUCg -3' miRNA: 3'- aGUUCCGCuu-GUAG------------CCGGACgUUUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home