miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30444 5' -58.3 NC_006548.1 + 983 0.69 0.284654
Target:  5'- gGUCGGCGcgGGAUCucaaccugcGCCAGGCUGagCa -3'
miRNA:   3'- -CAGCCGUa-CCUAG---------UGGUCCGGCagGg -5'
30444 5' -58.3 NC_006548.1 + 1983 0.68 0.346886
Target:  5'- -gCGGCugcaccaggGGAUCgggcACCAGGCCGUggCUCg -3'
miRNA:   3'- caGCCGua-------CCUAG----UGGUCCGGCA--GGG- -5'
30444 5' -58.3 NC_006548.1 + 4257 0.66 0.467173
Target:  5'- cGUCGGUGcucGAUCGCC-GGCUGUUCa -3'
miRNA:   3'- -CAGCCGUac-CUAGUGGuCCGGCAGGg -5'
30444 5' -58.3 NC_006548.1 + 5055 0.66 0.477307
Target:  5'- -gCGGCgcaggGUGGAuUUACCGGcGCCGgacucaCCCa -3'
miRNA:   3'- caGCCG-----UACCU-AGUGGUC-CGGCa-----GGG- -5'
30444 5' -58.3 NC_006548.1 + 5313 0.67 0.381466
Target:  5'- cUCGGCGuUGGcgCGCCGGGgC-UCCa -3'
miRNA:   3'- cAGCCGU-ACCuaGUGGUCCgGcAGGg -5'
30444 5' -58.3 NC_006548.1 + 5639 0.73 0.158402
Target:  5'- uUCGGgGUGGGUCuucuugaGCCAGGCCaucgaGUCCg -3'
miRNA:   3'- cAGCCgUACCUAG-------UGGUCCGG-----CAGGg -5'
30444 5' -58.3 NC_006548.1 + 8695 0.74 0.130786
Target:  5'- -cCGGCAUGGAaaGCCAGGagCGcCCCa -3'
miRNA:   3'- caGCCGUACCUagUGGUCCg-GCaGGG- -5'
30444 5' -58.3 NC_006548.1 + 12312 0.7 0.256998
Target:  5'- -cCGGUaccgcugaGUGGAUCGCCGgccuguauccGGCCG-CCCu -3'
miRNA:   3'- caGCCG--------UACCUAGUGGU----------CCGGCaGGG- -5'
30444 5' -58.3 NC_006548.1 + 13024 0.69 0.299342
Target:  5'- -gCGGagcCGUGGAUCACCAcGGCUGcgCCg -3'
miRNA:   3'- caGCC---GUACCUAGUGGU-CCGGCa-GGg -5'
30444 5' -58.3 NC_006548.1 + 14483 0.66 0.467173
Target:  5'- --gGGCAcGGAUCAgCuuGGCCGcCUCg -3'
miRNA:   3'- cagCCGUaCCUAGUgGu-CCGGCaGGG- -5'
30444 5' -58.3 NC_006548.1 + 15020 0.73 0.150311
Target:  5'- uGUgGGCggGGAUCaugaACCAGGCCG-CCa -3'
miRNA:   3'- -CAgCCGuaCCUAG----UGGUCCGGCaGGg -5'
30444 5' -58.3 NC_006548.1 + 16091 0.67 0.408867
Target:  5'- cGUCGGCAUGGccGUCAgCAGuGCgcUCCg -3'
miRNA:   3'- -CAGCCGUACC--UAGUgGUC-CGgcAGGg -5'
30444 5' -58.3 NC_006548.1 + 16125 0.69 0.314609
Target:  5'- -gCaGCAUGGAUCGCCAGaCCcagcgCCCa -3'
miRNA:   3'- caGcCGUACCUAGUGGUCcGGca---GGG- -5'
30444 5' -58.3 NC_006548.1 + 17150 0.68 0.321669
Target:  5'- -aCGGCcgGGGgugcccuggguacUCGCCAccuGGCCGagCCCg -3'
miRNA:   3'- caGCCGuaCCU-------------AGUGGU---CCGGCa-GGG- -5'
30444 5' -58.3 NC_006548.1 + 18184 1.12 0.000207
Target:  5'- uGUCGGCAUGGAUCACCAGGCCGUCCCa -3'
miRNA:   3'- -CAGCCGUACCUAGUGGUCCGGCAGGG- -5'
30444 5' -58.3 NC_006548.1 + 18302 0.71 0.23158
Target:  5'- cUCGGa--GGcUCGuCCGGGCCGUCCUu -3'
miRNA:   3'- cAGCCguaCCuAGU-GGUCCGGCAGGG- -5'
30444 5' -58.3 NC_006548.1 + 18439 0.73 0.172451
Target:  5'- -gCGGCGUGGucuUCugCAGGgCG-CCCu -3'
miRNA:   3'- caGCCGUACCu--AGugGUCCgGCaGGG- -5'
30444 5' -58.3 NC_006548.1 + 20072 0.67 0.408867
Target:  5'- -aCGGCAUGcucuaugccGAgccgCACCAGGUgGUgCCg -3'
miRNA:   3'- caGCCGUAC---------CUa---GUGGUCCGgCAgGG- -5'
30444 5' -58.3 NC_006548.1 + 20157 0.67 0.417323
Target:  5'- uUCGGUGUaccugccGGAcUCACCAGGCaacccgGUUCCg -3'
miRNA:   3'- cAGCCGUA-------CCU-AGUGGUCCGg-----CAGGG- -5'
30444 5' -58.3 NC_006548.1 + 20399 0.66 0.457152
Target:  5'- -gCGGCGcaGGAUCucggUCAGaGCCGUCaCCg -3'
miRNA:   3'- caGCCGUa-CCUAGu---GGUC-CGGCAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.