Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30444 | 5' | -58.3 | NC_006548.1 | + | 8695 | 0.74 | 0.130786 |
Target: 5'- -cCGGCAUGGAaaGCCAGGagCGcCCCa -3' miRNA: 3'- caGCCGUACCUagUGGUCCg-GCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 5055 | 0.66 | 0.477307 |
Target: 5'- -gCGGCgcaggGUGGAuUUACCGGcGCCGgacucaCCCa -3' miRNA: 3'- caGCCG-----UACCU-AGUGGUC-CGGCa-----GGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 31716 | 0.66 | 0.447247 |
Target: 5'- -cCGGC--GGGUCAUCGGGCCaggCCg -3' miRNA: 3'- caGCCGuaCCUAGUGGUCCGGca-GGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 30514 | 0.66 | 0.447247 |
Target: 5'- -cUGGCAUGGA--ACCAG-CCGaugCCCu -3' miRNA: 3'- caGCCGUACCUagUGGUCcGGCa--GGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 21181 | 0.67 | 0.418269 |
Target: 5'- -aUGGCAgcucGGAcgGCCuGGCCG-CCCa -3' miRNA: 3'- caGCCGUa---CCUagUGGuCCGGCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 20157 | 0.67 | 0.417323 |
Target: 5'- uUCGGUGUaccugccGGAcUCACCAGGCaacccgGUUCCg -3' miRNA: 3'- cAGCCGUA-------CCU-AGUGGUCCGg-----CAGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 20072 | 0.67 | 0.408867 |
Target: 5'- -aCGGCAUGcucuaugccGAgccgCACCAGGUgGUgCCg -3' miRNA: 3'- caGCCGUAC---------CUa---GUGGUCCGgCAgGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 5313 | 0.67 | 0.381466 |
Target: 5'- cUCGGCGuUGGcgCGCCGGGgC-UCCa -3' miRNA: 3'- cAGCCGU-ACCuaGUGGUCCgGcAGGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 21041 | 0.67 | 0.376134 |
Target: 5'- -gCGGCAggcUGGA-CGCCauaucagcacgaccgAGGCCGUuaCCCa -3' miRNA: 3'- caGCCGU---ACCUaGUGG---------------UCCGGCA--GGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 29080 | 0.73 | 0.150311 |
Target: 5'- cUCGGCA-GGAgUCGaguauCCAGGCCG-CCCa -3' miRNA: 3'- cAGCCGUaCCU-AGU-----GGUCCGGCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 15020 | 0.73 | 0.150311 |
Target: 5'- uGUgGGCggGGAUCaugaACCAGGCCG-CCa -3' miRNA: 3'- -CAgCCGuaCCUAG----UGGUCCGGCaGGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 5639 | 0.73 | 0.158402 |
Target: 5'- uUCGGgGUGGGUCuucuugaGCCAGGCCaucgaGUCCg -3' miRNA: 3'- cAGCCgUACCUAG-------UGGUCCGG-----CAGGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 12312 | 0.7 | 0.256998 |
Target: 5'- -cCGGUaccgcugaGUGGAUCGCCGgccuguauccGGCCG-CCCu -3' miRNA: 3'- caGCCG--------UACCUAGUGGU----------CCGGCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 24168 | 0.69 | 0.306903 |
Target: 5'- -cCGGCAUGacgUACCAGGCCGgugCUg -3' miRNA: 3'- caGCCGUACcuaGUGGUCCGGCa--GGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 29727 | 0.68 | 0.363892 |
Target: 5'- uUCGGCuucgccgaGGGUgGCCAGGuCCGUggUCCa -3' miRNA: 3'- cAGCCGua------CCUAgUGGUCC-GGCA--GGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 36251 | 0.66 | 0.477307 |
Target: 5'- uUCGGCGgcUGGA-CugC-GGaCGUCCCg -3' miRNA: 3'- cAGCCGU--ACCUaGugGuCCgGCAGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 21255 | 0.79 | 0.06038 |
Target: 5'- -cCGGCAgccUGGGcgGCCAGGCCGUCCg -3' miRNA: 3'- caGCCGU---ACCUagUGGUCCGGCAGGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 18439 | 0.73 | 0.172451 |
Target: 5'- -gCGGCGUGGucuUCugCAGGgCG-CCCu -3' miRNA: 3'- caGCCGUACCu--AGugGUCCgGCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 18302 | 0.71 | 0.23158 |
Target: 5'- cUCGGa--GGcUCGuCCGGGCCGUCCUu -3' miRNA: 3'- cAGCCguaCCuAGU-GGUCCGGCAGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 983 | 0.69 | 0.284654 |
Target: 5'- gGUCGGCGcgGGAUCucaaccugcGCCAGGCUGagCa -3' miRNA: 3'- -CAGCCGUa-CCUAG---------UGGUCCGGCagGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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