miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30445 5' -54.4 NC_006548.1 + 24803 0.66 0.708299
Target:  5'- cGGCUGGGUCuugccGGUGACGUUcagcaguUCGa -3'
miRNA:   3'- cCUGGCCCAGuaa--CCGCUGCGAu------AGC- -5'
30445 5' -54.4 NC_006548.1 + 35949 0.66 0.697296
Target:  5'- uGGCCGGcagggUGGCGGCGCg--CGa -3'
miRNA:   3'- cCUGGCCcaguaACCGCUGCGauaGC- -5'
30445 5' -54.4 NC_006548.1 + 5579 0.66 0.660587
Target:  5'- aGGCCGGGcCggcuugcgcaacugGUUGGCGAUGgcGUCGa -3'
miRNA:   3'- cCUGGCCCaG--------------UAACCGCUGCgaUAGC- -5'
30445 5' -54.4 NC_006548.1 + 36832 0.67 0.607878
Target:  5'- uGGCCGGGUgCuggugugUGGUGugGCgUAUCc -3'
miRNA:   3'- cCUGGCCCA-Gua-----ACCGCugCG-AUAGc -5'
30445 5' -54.4 NC_006548.1 + 22581 0.68 0.59669
Target:  5'- uGGCCGGcGuUCAacuccaGGaCGGCGCUAUCGu -3'
miRNA:   3'- cCUGGCC-C-AGUaa----CC-GCUGCGAUAGC- -5'
30445 5' -54.4 NC_006548.1 + 2060 0.68 0.574417
Target:  5'- uGGAUCGcGUC---GGCGAUGUUGUCGu -3'
miRNA:   3'- -CCUGGCcCAGuaaCCGCUGCGAUAGC- -5'
30445 5' -54.4 NC_006548.1 + 129 0.69 0.492108
Target:  5'- cGGCCGGGUCAaaaaGGCccaacugaucgguucGGCGUUGUCu -3'
miRNA:   3'- cCUGGCCCAGUaa--CCG---------------CUGCGAUAGc -5'
30445 5' -54.4 NC_006548.1 + 26342 0.69 0.487917
Target:  5'- cGGCCGGGUCGaUGGCcagaGCUA-CGg -3'
miRNA:   3'- cCUGGCCCAGUaACCGcug-CGAUaGC- -5'
30445 5' -54.4 NC_006548.1 + 24312 0.7 0.437055
Target:  5'- aGGGCCGGGUCugggccGGCGAgCGCc---- -3'
miRNA:   3'- -CCUGGCCCAGuaa---CCGCU-GCGauagc -5'
30445 5' -54.4 NC_006548.1 + 18523 0.72 0.362455
Target:  5'- uGGccGCCGGGUcCAUgucGGC-ACGCUGUCa -3'
miRNA:   3'- -CC--UGGCCCA-GUAa--CCGcUGCGAUAGc -5'
30445 5' -54.4 NC_006548.1 + 18556 1.12 0.000564
Target:  5'- cGGACCGGGUCAUUGGCGACGCUAUCGa -3'
miRNA:   3'- -CCUGGCCCAGUAACCGCUGCGAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.