miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30462 3' -52 NC_006548.1 + 25946 1.11 0.000919
Target:  5'- gAUCUGCAAUUCGUCGUAACGGCCCGCg -3'
miRNA:   3'- -UAGACGUUAAGCAGCAUUGCCGGGCG- -5'
30462 3' -52 NC_006548.1 + 28156 0.69 0.622258
Target:  5'- uUCUGCAGgcgGUUGaguuCGGCCUGCa -3'
miRNA:   3'- uAGACGUUaagCAGCauu-GCCGGGCG- -5'
30462 3' -52 NC_006548.1 + 21836 0.67 0.736631
Target:  5'- -gUUGUAGUUCGUCGguGCGuugucgauauccGCCUGCg -3'
miRNA:   3'- uaGACGUUAAGCAGCauUGC------------CGGGCG- -5'
30462 3' -52 NC_006548.1 + 21444 0.67 0.736631
Target:  5'- --aUGCAa---GUgGUGGCGGCCgGCg -3'
miRNA:   3'- uagACGUuaagCAgCAUUGCCGGgCG- -5'
30462 3' -52 NC_006548.1 + 36809 0.66 0.790263
Target:  5'- cUCUGCGAgcgUCGcCGagcugguGCGGCUCaGCa -3'
miRNA:   3'- uAGACGUUa--AGCaGCau-----UGCCGGG-CG- -5'
30462 3' -52 NC_006548.1 + 17175 0.71 0.485669
Target:  5'- aAUCUGCGAgUCGuucaaccUCGgccCGGCCCGUu -3'
miRNA:   3'- -UAGACGUUaAGC-------AGCauuGCCGGGCG- -5'
30462 3' -52 NC_006548.1 + 2067 0.71 0.486747
Target:  5'- cGUCgGCGAUgUUGUCGUcGAC-GCCCGCg -3'
miRNA:   3'- -UAGaCGUUA-AGCAGCA-UUGcCGGGCG- -5'
30462 3' -52 NC_006548.1 + 28022 0.7 0.576093
Target:  5'- uUCUGCcg--CGguUCGgcGCGGCCCuGCa -3'
miRNA:   3'- uAGACGuuaaGC--AGCauUGCCGGG-CG- -5'
30462 3' -52 NC_006548.1 + 2884 0.68 0.657018
Target:  5'- cGUCgaagGCGAUgUUGUCGgccAUGGCCCGa -3'
miRNA:   3'- -UAGa---CGUUA-AGCAGCau-UGCCGGGCg -5'
30462 3' -52 NC_006548.1 + 27004 0.68 0.657018
Target:  5'- cGUCgGCGAgucCGcCGaucagcaGACGGCCCGCa -3'
miRNA:   3'- -UAGaCGUUaa-GCaGCa------UUGCCGGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.