Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 20563 | 0.66 | 0.325205 |
Target: 5'- uGCGGCGuCGAcGCcuucuauuGCGGGUUcggagaacgacgCCuGGGCa -3' miRNA: 3'- -CGCCGC-GCU-CG--------UGCCCGAa-----------GGuCCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 1261 | 0.66 | 0.3221 |
Target: 5'- cGCGGUGCG-GCAgGcuuGGCUuugagcgucgaauucUcggCCAGGGCu -3' miRNA: 3'- -CGCCGCGCuCGUgC---CCGA---------------A---GGUCCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 4873 | 0.66 | 0.31825 |
Target: 5'- cGCGaaGCGuGCcucCGGGCUcgauuucggccgcUCCAGuGGCg -3' miRNA: 3'- -CGCcgCGCuCGu--GCCCGA-------------AGGUC-CCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 29621 | 0.66 | 0.303937 |
Target: 5'- uGCGGcCGCGA--AUGGGCU-CgCAGGuGCu -3' miRNA: 3'- -CGCC-GCGCUcgUGCCCGAaG-GUCC-CG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 24029 | 0.66 | 0.296604 |
Target: 5'- gGCaGuCGCGAGCGCcugccaggccGGGCggugUCCAgccgaucaGGGCc -3' miRNA: 3'- -CGcC-GCGCUCGUG----------CCCGa---AGGU--------CCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 2307 | 0.66 | 0.296604 |
Target: 5'- gGCGGCGCcgGAGCugACcGGCUacgccuaCCAGGuGCu -3' miRNA: 3'- -CGCCGCG--CUCG--UGcCCGAa------GGUCC-CG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 21008 | 0.66 | 0.28941 |
Target: 5'- uGCaGCGCGAGCGCaGaGCUaUCAGGa- -3' miRNA: 3'- -CGcCGCGCUCGUGcC-CGAaGGUCCcg -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 35962 | 0.66 | 0.28941 |
Target: 5'- gGCGGCGCGcgacuGCaACGugucgacgucGGCUauccgcaagcUCCAGGuGCg -3' miRNA: 3'- -CGCCGCGCu----CG-UGC----------CCGA----------AGGUCC-CG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 35878 | 0.66 | 0.28941 |
Target: 5'- cCGGCGCGAuccGCGCGG----CCGGcGGCg -3' miRNA: 3'- cGCCGCGCU---CGUGCCcgaaGGUC-CCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 27217 | 0.66 | 0.28941 |
Target: 5'- gGCGGCGacCGAGCaACGcGCUgCCGaGGCg -3' miRNA: 3'- -CGCCGC--GCUCG-UGCcCGAaGGUcCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 24923 | 0.66 | 0.28941 |
Target: 5'- cUGGCGCucaucaacgacGAGUACGGcaCUUCCAgcucacGGGCa -3' miRNA: 3'- cGCCGCG-----------CUCGUGCCc-GAAGGU------CCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 18247 | 0.66 | 0.282353 |
Target: 5'- -aGGCGCugacuGAGCACuGGCaUCCccagccauuGGGCg -3' miRNA: 3'- cgCCGCG-----CUCGUGcCCGaAGGu--------CCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 13163 | 0.66 | 0.282353 |
Target: 5'- gGCGcGCGCGAccugcugcuuGUACuGGa--CCAGGGCg -3' miRNA: 3'- -CGC-CGCGCU----------CGUGcCCgaaGGUCCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 7191 | 0.67 | 0.275434 |
Target: 5'- aGCGGCGCaAGgACucgGGGCagagCCgccuGGGGCg -3' miRNA: 3'- -CGCCGCGcUCgUG---CCCGaa--GG----UCCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 12830 | 0.67 | 0.268651 |
Target: 5'- aGCGGCGCGguaAGUcCGGuGUggCUcGGGCg -3' miRNA: 3'- -CGCCGCGC---UCGuGCC-CGaaGGuCCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 27482 | 0.67 | 0.261345 |
Target: 5'- cUGGCGCucaauGGCAUggGGGCUgcaauucgacgggUCCAGGGg -3' miRNA: 3'- cGCCGCGc----UCGUG--CCCGA-------------AGGUCCCg -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 23546 | 0.67 | 0.255489 |
Target: 5'- uCGGCGaUGAGCugcaGGaaUUUCAGGGCg -3' miRNA: 3'- cGCCGC-GCUCGug--CCcgAAGGUCCCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 34993 | 0.67 | 0.242861 |
Target: 5'- uGCGGagGCGAGCaAUGGGCggCCGuaGCa -3' miRNA: 3'- -CGCCg-CGCUCG-UGCCCGaaGGUccCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 30427 | 0.68 | 0.236745 |
Target: 5'- gGCGGCacgGCGuucaauGCugGGGCgaucccgcCCGGuGGCg -3' miRNA: 3'- -CGCCG---CGCu-----CGugCCCGaa------GGUC-CCG- -5' |
|||||||
30467 | 3' | -61.8 | NC_006548.1 | + | 9015 | 0.68 | 0.219166 |
Target: 5'- gGCGaGCGCG-GCACccaGGuCUUCCAGuuccGGCg -3' miRNA: 3'- -CGC-CGCGCuCGUGc--CC-GAAGGUC----CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home