miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30470 3' -56.4 NC_006548.1 + 19132 0.66 0.505889
Target:  5'- --gGCAGCGCAGCgcugggagauCCGAgCGgGCUUc -3'
miRNA:   3'- guaCGUCGCGUCG----------GGUUgGUgCGAAc -5'
30470 3' -56.4 NC_006548.1 + 28767 0.66 0.505889
Target:  5'- --cGCAaCGCAGCCCGGCCcuUGCc-- -3'
miRNA:   3'- guaCGUcGCGUCGGGUUGGu-GCGaac -5'
30470 3' -56.4 NC_006548.1 + 16981 0.66 0.505889
Target:  5'- gCAUGCAGgGCcGCCagUAGCUugGCcUUGu -3'
miRNA:   3'- -GUACGUCgCGuCGG--GUUGGugCG-AAC- -5'
30470 3' -56.4 NC_006548.1 + 22065 0.66 0.495128
Target:  5'- --cGguGCGaCGGCCCAG-CACGCc-- -3'
miRNA:   3'- guaCguCGC-GUCGGGUUgGUGCGaac -5'
30470 3' -56.4 NC_006548.1 + 1066 0.66 0.494058
Target:  5'- cCAUGUcgacgacccagccGGCGCAGCUCAGCauCGCUg- -3'
miRNA:   3'- -GUACG-------------UCGCGUCGGGUUGguGCGAac -5'
30470 3' -56.4 NC_006548.1 + 1261 0.66 0.473927
Target:  5'- --cGCGGUGCGGCa-GGCUugGCUUu -3'
miRNA:   3'- guaCGUCGCGUCGggUUGGugCGAAc -5'
30470 3' -56.4 NC_006548.1 + 23758 0.66 0.473927
Target:  5'- uUcgGCGGCGCcGCCCA--CGUGCUUGa -3'
miRNA:   3'- -GuaCGUCGCGuCGGGUugGUGCGAAC- -5'
30470 3' -56.4 NC_006548.1 + 13078 0.66 0.473927
Target:  5'- --aGCAGCGCAGCgUcACCcucgGCGCg-- -3'
miRNA:   3'- guaCGUCGCGUCGgGuUGG----UGCGaac -5'
30470 3' -56.4 NC_006548.1 + 1921 0.67 0.463498
Target:  5'- gGUGCccgauccccuGGUGCAGCC--GCgCGCGCUUGc -3'
miRNA:   3'- gUACG----------UCGCGUCGGguUG-GUGCGAAC- -5'
30470 3' -56.4 NC_006548.1 + 21935 0.67 0.461426
Target:  5'- --cGCGGCGUAGCUauuggggcugaaGACCA-GCUUGg -3'
miRNA:   3'- guaCGUCGCGUCGGg-----------UUGGUgCGAAC- -5'
30470 3' -56.4 NC_006548.1 + 29577 0.67 0.443009
Target:  5'- gGUGaCAGCaGCAGCUCccgucACCAUGCUg- -3'
miRNA:   3'- gUAC-GUCG-CGUCGGGu----UGGUGCGAac -5'
30470 3' -56.4 NC_006548.1 + 29825 0.67 0.443009
Target:  5'- --gGCGGcCGCAaCCCAGCCGgGCaUGa -3'
miRNA:   3'- guaCGUC-GCGUcGGGUUGGUgCGaAC- -5'
30470 3' -56.4 NC_006548.1 + 7204 0.67 0.432957
Target:  5'- gAUGcCAGCGacaGGCCCAgcucuGCCGCgGCUg- -3'
miRNA:   3'- gUAC-GUCGCg--UCGGGU-----UGGUG-CGAac -5'
30470 3' -56.4 NC_006548.1 + 36688 0.67 0.432957
Target:  5'- uCAUGCGGCGCuGGCaCCGuauCgACGCa-- -3'
miRNA:   3'- -GUACGUCGCG-UCG-GGUu--GgUGCGaac -5'
30470 3' -56.4 NC_006548.1 + 2731 0.68 0.403622
Target:  5'- --gGCGGCGCAGggCAAgCACGCUg- -3'
miRNA:   3'- guaCGUCGCGUCggGUUgGUGCGAac -5'
30470 3' -56.4 NC_006548.1 + 27861 0.68 0.394126
Target:  5'- gGUGCAGCGCAGUgguggCCGagGCgACGCc-- -3'
miRNA:   3'- gUACGUCGCGUCG-----GGU--UGgUGCGaac -5'
30470 3' -56.4 NC_006548.1 + 36371 0.68 0.384776
Target:  5'- -cUGCAgaugaacuacGCGCuGCUCAGCCGCGUggGa -3'
miRNA:   3'- guACGU----------CGCGuCGGGUUGGUGCGaaC- -5'
30470 3' -56.4 NC_006548.1 + 20118 0.68 0.376488
Target:  5'- gCAUGCcgucGCGCaccuccagacccuuGGCCCAGCCAUaggccggcgcauugaGCUUGg -3'
miRNA:   3'- -GUACGu---CGCG--------------UCGGGUUGGUG---------------CGAAC- -5'
30470 3' -56.4 NC_006548.1 + 16576 0.68 0.375575
Target:  5'- -cUGguGaCGCGGuCCCAGCCcACGCg-- -3'
miRNA:   3'- guACguC-GCGUC-GGGUUGG-UGCGaac -5'
30470 3' -56.4 NC_006548.1 + 32464 0.68 0.375575
Target:  5'- --gGCGGCGaCGGCugCCGGCCAgGCUg- -3'
miRNA:   3'- guaCGUCGC-GUCG--GGUUGGUgCGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.