miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30479 3' -58.3 NC_006548.1 + 1051 0.66 0.516162
Target:  5'- cGCu-CGUCagcaGCUCGGCCugcaGGACGAUGu -3'
miRNA:   3'- aCGcuGCAG----CGAGCCGG----CCUGUUGCc -5'
30479 3' -58.3 NC_006548.1 + 11745 0.66 0.516162
Target:  5'- cGCGGCG-CGCggCGgcGCCGGGguuGCGGc -3'
miRNA:   3'- aCGCUGCaGCGa-GC--CGGCCUgu-UGCC- -5'
30479 3' -58.3 NC_006548.1 + 22301 0.66 0.516162
Target:  5'- gGUGcCGUUGCgggugUCGGCCaGGCGaucGCGGu -3'
miRNA:   3'- aCGCuGCAGCG-----AGCCGGcCUGU---UGCC- -5'
30479 3' -58.3 NC_006548.1 + 17052 0.66 0.516162
Target:  5'- cGCGACcaUCGCcaaGGUCGGGCu-CGGc -3'
miRNA:   3'- aCGCUGc-AGCGag-CCGGCCUGuuGCC- -5'
30479 3' -58.3 NC_006548.1 + 1196 0.66 0.505804
Target:  5'- cGCacaGGCGUUGCU-GGCCGcGCAgACGGc -3'
miRNA:   3'- aCG---CUGCAGCGAgCCGGCcUGU-UGCC- -5'
30479 3' -58.3 NC_006548.1 + 17443 0.66 0.505804
Target:  5'- gGCGcCGUgGcCUCGGCCugGGugGACu- -3'
miRNA:   3'- aCGCuGCAgC-GAGCCGG--CCugUUGcc -5'
30479 3' -58.3 NC_006548.1 + 24788 0.66 0.495536
Target:  5'- gGUGACGUUcagcaGUUCgaucaGGCCGGACGuUGGc -3'
miRNA:   3'- aCGCUGCAG-----CGAG-----CCGGCCUGUuGCC- -5'
30479 3' -58.3 NC_006548.1 + 33733 0.66 0.495536
Target:  5'- cGCGAUGagcuucagugaUCGCgagCGGUCGGucgcCGAUGGc -3'
miRNA:   3'- aCGCUGC-----------AGCGa--GCCGGCCu---GUUGCC- -5'
30479 3' -58.3 NC_006548.1 + 16024 0.66 0.485363
Target:  5'- gGUGACcUCGCgcaaggCGGCgCGGAUcuuCGGg -3'
miRNA:   3'- aCGCUGcAGCGa-----GCCG-GCCUGuu-GCC- -5'
30479 3' -58.3 NC_006548.1 + 13402 0.66 0.47429
Target:  5'- aGCGGCGUCaCUCcggcggacauccuGGCCuuugcccaGGACuACGGg -3'
miRNA:   3'- aCGCUGCAGcGAG-------------CCGG--------CCUGuUGCC- -5'
30479 3' -58.3 NC_006548.1 + 29894 0.66 0.465325
Target:  5'- aGCGGgGUCauGCcCGGCUGGGuuGCGGc -3'
miRNA:   3'- aCGCUgCAG--CGaGCCGGCCUguUGCC- -5'
30479 3' -58.3 NC_006548.1 + 721 0.67 0.455468
Target:  5'- gGCGGCGUUGCacgUCGaGCaGGAgaAACGGu -3'
miRNA:   3'- aCGCUGCAGCG---AGC-CGgCCUg-UUGCC- -5'
30479 3' -58.3 NC_006548.1 + 27276 0.67 0.455468
Target:  5'- aGCG-CGUUGCUCGGUCgccgccugcuGGACG-CGa -3'
miRNA:   3'- aCGCuGCAGCGAGCCGG----------CCUGUuGCc -5'
30479 3' -58.3 NC_006548.1 + 35377 0.67 0.455468
Target:  5'- gGCGACGagCGCUcaaCGGaUgGGACggUGGa -3'
miRNA:   3'- aCGCUGCa-GCGA---GCC-GgCCUGuuGCC- -5'
30479 3' -58.3 NC_006548.1 + 30839 0.67 0.454489
Target:  5'- cUGCGACaGUgaaaccgagccagCGCcCGGCgGGAUcGCGGa -3'
miRNA:   3'- -ACGCUG-CA-------------GCGaGCCGgCCUGuUGCC- -5'
30479 3' -58.3 NC_006548.1 + 9300 0.67 0.445725
Target:  5'- cGCuGGCGgauGCUCaGCCGGGCGAUa- -3'
miRNA:   3'- aCG-CUGCag-CGAGcCGGCCUGUUGcc -5'
30479 3' -58.3 NC_006548.1 + 14411 0.67 0.445725
Target:  5'- aGCGAUGcacgGCUgcaCGGCUGGGCAGCu- -3'
miRNA:   3'- aCGCUGCag--CGA---GCCGGCCUGUUGcc -5'
30479 3' -58.3 NC_006548.1 + 35882 0.67 0.426594
Target:  5'- cGCGAUc-CGCgCGGCCGG-CGGCGu -3'
miRNA:   3'- aCGCUGcaGCGaGCCGGCCuGUUGCc -5'
30479 3' -58.3 NC_006548.1 + 5696 0.67 0.426594
Target:  5'- cUGCGcGCGUagaCGUUUGGCCGccucGACAuGCGGa -3'
miRNA:   3'- -ACGC-UGCA---GCGAGCCGGC----CUGU-UGCC- -5'
30479 3' -58.3 NC_006548.1 + 12211 0.67 0.417214
Target:  5'- cGCGGCGauacUGCUCGGC-GGcCcGCGGg -3'
miRNA:   3'- aCGCUGCa---GCGAGCCGgCCuGuUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.