miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30479 3' -58.3 NC_006548.1 + 36263 0.69 0.315087
Target:  5'- gGCGGgGUCcaGUucggCGGCUGGACuGCGGa -3'
miRNA:   3'- aCGCUgCAG--CGa---GCCGGCCUGuUGCC- -5'
30479 3' -58.3 NC_006548.1 + 16024 0.66 0.485363
Target:  5'- gGUGACcUCGCgcaaggCGGCgCGGAUcuuCGGg -3'
miRNA:   3'- aCGCUGcAGCGa-----GCCG-GCCUGuu-GCC- -5'
30479 3' -58.3 NC_006548.1 + 17443 0.66 0.505804
Target:  5'- gGCGcCGUgGcCUCGGCCugGGugGACu- -3'
miRNA:   3'- aCGCuGCAgC-GAGCCGG--CCugUUGcc -5'
30479 3' -58.3 NC_006548.1 + 1051 0.66 0.516162
Target:  5'- cGCu-CGUCagcaGCUCGGCCugcaGGACGAUGu -3'
miRNA:   3'- aCGcuGCAG----CGAGCCGG----CCUGUUGCc -5'
30479 3' -58.3 NC_006548.1 + 17509 0.68 0.355227
Target:  5'- cUGCGGCGccaUCGCcgCuGCUGGGuCGACGGc -3'
miRNA:   3'- -ACGCUGC---AGCGa-GcCGGCCU-GUUGCC- -5'
30479 3' -58.3 NC_006548.1 + 33367 0.68 0.371397
Target:  5'- cUGCGcaGCGcCGCaugcuccucgCGGCCGGAggucugcCAACGGa -3'
miRNA:   3'- -ACGC--UGCaGCGa---------GCCGGCCU-------GUUGCC- -5'
30479 3' -58.3 NC_006548.1 + 12211 0.67 0.417214
Target:  5'- cGCGGCGauacUGCUCGGC-GGcCcGCGGg -3'
miRNA:   3'- aCGCUGCa---GCGAGCCGgCCuGuUGCC- -5'
30479 3' -58.3 NC_006548.1 + 33662 1.1 0.00036
Target:  5'- gUGCGACGUCGCUCGGCCGGACAACGGu -3'
miRNA:   3'- -ACGCUGCAGCGAGCCGGCCUGUUGCC- -5'
30479 3' -58.3 NC_006548.1 + 15583 0.72 0.204492
Target:  5'- gGCcACGUCGUcgUCGGCCGGAUuGCa- -3'
miRNA:   3'- aCGcUGCAGCG--AGCCGGCCUGuUGcc -5'
30479 3' -58.3 NC_006548.1 + 29894 0.66 0.465325
Target:  5'- aGCGGgGUCauGCcCGGCUGGGuuGCGGc -3'
miRNA:   3'- aCGCUgCAG--CGaGCCGGCCUguUGCC- -5'
30479 3' -58.3 NC_006548.1 + 30839 0.67 0.454489
Target:  5'- cUGCGACaGUgaaaccgagccagCGCcCGGCgGGAUcGCGGa -3'
miRNA:   3'- -ACGCUG-CA-------------GCGaGCCGgCCUGuUGCC- -5'
30479 3' -58.3 NC_006548.1 + 14411 0.67 0.445725
Target:  5'- aGCGAUGcacgGCUgcaCGGCUGGGCAGCu- -3'
miRNA:   3'- aCGCUGCag--CGA---GCCGGCCUGUUGcc -5'
30479 3' -58.3 NC_006548.1 + 21752 0.69 0.33072
Target:  5'- gGUGGCGcugaacucuacuUCGUUCGGCUuGGACuuGCGGc -3'
miRNA:   3'- aCGCUGC------------AGCGAGCCGG-CCUGu-UGCC- -5'
30479 3' -58.3 NC_006548.1 + 27276 0.67 0.455468
Target:  5'- aGCG-CGUUGCUCGGUCgccgccugcuGGACG-CGa -3'
miRNA:   3'- aCGCuGCAGCGAGCCGG----------CCUGUuGCc -5'
30479 3' -58.3 NC_006548.1 + 19958 0.69 0.33072
Target:  5'- aGCGACGU-GC-CGGCCGGcggggaggauugGCAgagugGCGGu -3'
miRNA:   3'- aCGCUGCAgCGaGCCGGCC------------UGU-----UGCC- -5'
30479 3' -58.3 NC_006548.1 + 4125 0.67 0.417214
Target:  5'- -uCGGCGUCGaugUgGGCUGGACGACc- -3'
miRNA:   3'- acGCUGCAGCg--AgCCGGCCUGUUGcc -5'
30479 3' -58.3 NC_006548.1 + 721 0.67 0.455468
Target:  5'- gGCGGCGUUGCacgUCGaGCaGGAgaAACGGu -3'
miRNA:   3'- aCGCUGCAGCG---AGC-CGgCCUg-UUGCC- -5'
30479 3' -58.3 NC_006548.1 + 24788 0.66 0.495536
Target:  5'- gGUGACGUUcagcaGUUCgaucaGGCCGGACGuUGGc -3'
miRNA:   3'- aCGCUGCAG-----CGAG-----CCGGCCUGUuGCC- -5'
30479 3' -58.3 NC_006548.1 + 36807 0.68 0.355227
Target:  5'- cUGCGAgCGUCGC-CGaGCUGGu--GCGGc -3'
miRNA:   3'- -ACGCU-GCAGCGaGC-CGGCCuguUGCC- -5'
30479 3' -58.3 NC_006548.1 + 17809 0.68 0.389844
Target:  5'- -uCGACGgauGCUUGGCCuGGAagaAGCGGa -3'
miRNA:   3'- acGCUGCag-CGAGCCGG-CCUg--UUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.