Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 22142 | 0.66 | 0.588401 |
Target: 5'- aCAUCGGcgaaGCGCGGcUGaacaucGCUCGGCCGg -3' miRNA: 3'- cGUGGCCua--UGCGUC-AU------UGGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 23804 | 0.66 | 0.566394 |
Target: 5'- cCGCCGGccAUGC-CGGUggcgcGACCCGGCa- -3' miRNA: 3'- cGUGGCC--UAUGcGUCA-----UUGGGCCGgc -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 24234 | 0.66 | 0.588401 |
Target: 5'- aGCACCaGAagauCGCGGUcgaaacccagGACgCGGCCa -3' miRNA: 3'- -CGUGGcCUau--GCGUCA----------UUGgGCCGGc -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 26243 | 0.68 | 0.440863 |
Target: 5'- uCGCCaGGUcuucaagugGCuGCAGgaGACCCGGCCGg -3' miRNA: 3'- cGUGGcCUA---------UG-CGUCa-UUGGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 26342 | 0.7 | 0.340902 |
Target: 5'- cGCGCUGGAUGuCGguCAGcguuUCCGGCCGg -3' miRNA: 3'- -CGUGGCCUAU-GC--GUCauu-GGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 27534 | 0.67 | 0.523094 |
Target: 5'- uCGCCGGcauCGcCGGUuacGGCCUGGCCu -3' miRNA: 3'- cGUGGCCuauGC-GUCA---UUGGGCCGGc -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 27974 | 0.68 | 0.431098 |
Target: 5'- cGCGCCGGGaACGCG-----CUGGCCGa -3' miRNA: 3'- -CGUGGCCUaUGCGUcauugGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 28079 | 0.7 | 0.357808 |
Target: 5'- cGCGCCGaaccGCgGCAGaAACUCGGCCGc -3' miRNA: 3'- -CGUGGCcua-UG-CGUCaUUGGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 28257 | 0.66 | 0.576274 |
Target: 5'- cCGCCGGAUcuuucagcacaucACGCAGgucucGCaCGGCCu -3' miRNA: 3'- cGUGGCCUA-------------UGCGUCau---UGgGCCGGc -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 28627 | 0.7 | 0.327798 |
Target: 5'- uGUACCGGugACgGUAGUcgcggguagcgccgcGACCUGGCCGg -3' miRNA: 3'- -CGUGGCCuaUG-CGUCA---------------UUGGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 29281 | 0.69 | 0.402583 |
Target: 5'- cGCgGCCGGAU-CGcCAGUuGCCUuGGCCa -3' miRNA: 3'- -CG-UGGCCUAuGC-GUCAuUGGG-CCGGc -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 29367 | 0.67 | 0.481126 |
Target: 5'- aUACCGGAU-CGCagagccaaAGUGAgCUGGUCGg -3' miRNA: 3'- cGUGGCCUAuGCG--------UCAUUgGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 32623 | 0.7 | 0.332668 |
Target: 5'- gGCGCaaaCGGccACGCGGUGAUCCGGuuuCCGg -3' miRNA: 3'- -CGUG---GCCuaUGCGUCAUUGGGCC---GGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 32870 | 0.69 | 0.393347 |
Target: 5'- uGCGCCGGc--CGCGGUGACgCUuGCCa -3' miRNA: 3'- -CGUGGCCuauGCGUCAUUG-GGcCGGc -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 32963 | 0.71 | 0.316641 |
Target: 5'- cGCGCCcGGUGCaGCGGcgcuGgCCGGCCGg -3' miRNA: 3'- -CGUGGcCUAUG-CGUCau--UgGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 33013 | 0.69 | 0.393347 |
Target: 5'- uGCACCGGGcGCGcCAGUugaaucgccGACgCGGUCa -3' miRNA: 3'- -CGUGGCCUaUGC-GUCA---------UUGgGCCGGc -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 33946 | 0.67 | 0.501918 |
Target: 5'- aGCgACCuGGAgguUGCGCAGcUGuaccguggcGCUCGGCCGu -3' miRNA: 3'- -CG-UGG-CCU---AUGCGUC-AU---------UGGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 34749 | 0.68 | 0.421461 |
Target: 5'- uCGCCGaaGAUcACGUAGUGGCCgGuGCCGu -3' miRNA: 3'- cGUGGC--CUA-UGCGUCAUUGGgC-CGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 34816 | 0.66 | 0.585088 |
Target: 5'- cGCAUC---UGCGCAGUGuaccggggcugaccAgCCGGCCGg -3' miRNA: 3'- -CGUGGccuAUGCGUCAU--------------UgGGCCGGC- -5' |
|||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 34911 | 1.12 | 0.000342 |
Target: 5'- cGCACCGGAUACGCAGUAACCCGGCCGg -3' miRNA: 3'- -CGUGGCCUAUGCGUCAUUGGGCCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home