miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30485 5' -56.4 NC_006548.1 + 217 0.79 0.090411
Target:  5'- aGCACCGGAgacaACGCcgaaccgaucAGUugggccuuuuuGACCCGGCCGa -3'
miRNA:   3'- -CGUGGCCUa---UGCG----------UCA-----------UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 1363 0.68 0.450752
Target:  5'- aCGCCGGuAUACaaCGG-AGCCCuGGCCGa -3'
miRNA:   3'- cGUGGCC-UAUGc-GUCaUUGGG-CCGGC- -5'
30485 5' -56.4 NC_006548.1 + 1461 0.67 0.533811
Target:  5'- -aACUGGuucaGCAGUu-CCUGGCCGg -3'
miRNA:   3'- cgUGGCCuaugCGUCAuuGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 5044 0.66 0.588401
Target:  5'- uGCACCaGAUcgcgGCGCAGgguggauuuACCgGcGCCGg -3'
miRNA:   3'- -CGUGGcCUA----UGCGUCau-------UGGgC-CGGC- -5'
30485 5' -56.4 NC_006548.1 + 6512 0.73 0.21488
Target:  5'- cGCGCCaGGGcgGCGCGGguuacgGGCUCGGUCGa -3'
miRNA:   3'- -CGUGG-CCUa-UGCGUCa-----UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 6896 0.66 0.577374
Target:  5'- gGCGCCaauagcugggauGGAUGCagGCGGUAGCUgugcagcgcgCGGCUGa -3'
miRNA:   3'- -CGUGG------------CCUAUG--CGUCAUUGG----------GCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 8201 0.66 0.577374
Target:  5'- aGUGCCGaGGUcaugGCGCAGUucGGCgaCGGCCu -3'
miRNA:   3'- -CGUGGC-CUA----UGCGUCA--UUGg-GCCGGc -5'
30485 5' -56.4 NC_006548.1 + 12286 0.7 0.340902
Target:  5'- cGCACaGGGccugGCGCAGUuuauGCCCGGUa- -3'
miRNA:   3'- -CGUGgCCUa---UGCGUCAu---UGGGCCGgc -5'
30485 5' -56.4 NC_006548.1 + 13306 0.67 0.501918
Target:  5'- gGCGCCGGuuugcccgcCGCAGgaGCgCGcGCCGa -3'
miRNA:   3'- -CGUGGCCuau------GCGUCauUGgGC-CGGC- -5'
30485 5' -56.4 NC_006548.1 + 14029 0.68 0.470888
Target:  5'- aGgACCGGccccuCGUAGgcGCCCaccGGCCGa -3'
miRNA:   3'- -CgUGGCCuau--GCGUCauUGGG---CCGGC- -5'
30485 5' -56.4 NC_006548.1 + 14208 0.66 0.577374
Target:  5'- -uGCCGGGUuCGCAGUcgaugguguACUCGGCg- -3'
miRNA:   3'- cgUGGCCUAuGCGUCAu--------UGGGCCGgc -5'
30485 5' -56.4 NC_006548.1 + 14968 0.68 0.440863
Target:  5'- uCACCGGcagcAUAgGCGGUgGACCaggacaGGCCGa -3'
miRNA:   3'- cGUGGCC----UAUgCGUCA-UUGGg-----CCGGC- -5'
30485 5' -56.4 NC_006548.1 + 15142 0.67 0.533811
Target:  5'- aGCAacCCGGAcGCGCAGgccggcaAGCgCGGCgGa -3'
miRNA:   3'- -CGU--GGCCUaUGCGUCa------UUGgGCCGgC- -5'
30485 5' -56.4 NC_006548.1 + 17276 0.66 0.566394
Target:  5'- cGCGCCGGGgaaguuccACuCGGUcagccaacgGGCCgGGCCGa -3'
miRNA:   3'- -CGUGGCCUa-------UGcGUCA---------UUGGgCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 17627 0.68 0.470888
Target:  5'- -gGCUGGAg--GCAGcucACCUGGCCGg -3'
miRNA:   3'- cgUGGCCUaugCGUCau-UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 17820 0.67 0.501918
Target:  5'- aGCGCCGGGgcaaauCGCGccGACCUGGUgGc -3'
miRNA:   3'- -CGUGGCCUau----GCGUcaUUGGGCCGgC- -5'
30485 5' -56.4 NC_006548.1 + 19003 0.66 0.588401
Target:  5'- -aGCCGGAacugGCGauuu--CCCGGCCGc -3'
miRNA:   3'- cgUGGCCUa---UGCgucauuGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 20029 0.68 0.460762
Target:  5'- aGCGCCGGAU-CGUAGgu-CgCGGCg- -3'
miRNA:   3'- -CGUGGCCUAuGCGUCauuGgGCCGgc -5'
30485 5' -56.4 NC_006548.1 + 20864 0.73 0.238921
Target:  5'- uCACCGGAgccuucugGCGCGGcAGCaggCGGCCGg -3'
miRNA:   3'- cGUGGCCUa-------UGCGUCaUUGg--GCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 20952 0.68 0.431098
Target:  5'- aGCACCucGGccGCcgGCuuuGUGACCUGGCCGu -3'
miRNA:   3'- -CGUGG--CCuaUG--CGu--CAUUGGGCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.