miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30485 5' -56.4 NC_006548.1 + 32963 0.71 0.316641
Target:  5'- cGCGCCcGGUGCaGCGGcgcuGgCCGGCCGg -3'
miRNA:   3'- -CGUGGcCUAUG-CGUCau--UgGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 35408 0.66 0.566394
Target:  5'- -aACCuGGUAUcccgagaaaGCAGUGaucaGCCUGGCCGg -3'
miRNA:   3'- cgUGGcCUAUG---------CGUCAU----UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 23804 0.66 0.566394
Target:  5'- cCGCCGGccAUGC-CGGUggcgcGACCCGGCa- -3'
miRNA:   3'- cGUGGCC--UAUGcGUCA-----UUGGGCCGgc -5'
30485 5' -56.4 NC_006548.1 + 6896 0.66 0.577374
Target:  5'- gGCGCCaauagcugggauGGAUGCagGCGGUAGCUgugcagcgcgCGGCUGa -3'
miRNA:   3'- -CGUGG------------CCUAUG--CGUCAUUGG----------GCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 34816 0.66 0.585088
Target:  5'- cGCAUC---UGCGCAGUGuaccggggcugaccAgCCGGCCGg -3'
miRNA:   3'- -CGUGGccuAUGCGUCAU--------------UgGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 19003 0.66 0.588401
Target:  5'- -aGCCGGAacugGCGauuu--CCCGGCCGc -3'
miRNA:   3'- cgUGGCCUa---UGCgucauuGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 24234 0.66 0.588401
Target:  5'- aGCACCaGAagauCGCGGUcgaaacccagGACgCGGCCa -3'
miRNA:   3'- -CGUGGcCUau--GCGUCA----------UUGgGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 5044 0.66 0.588401
Target:  5'- uGCACCaGAUcgcgGCGCAGgguggauuuACCgGcGCCGg -3'
miRNA:   3'- -CGUGGcCUA----UGCGUCau-------UGGgC-CGGC- -5'
30485 5' -56.4 NC_006548.1 + 22142 0.66 0.588401
Target:  5'- aCAUCGGcgaaGCGCGGcUGaacaucGCUCGGCCGg -3'
miRNA:   3'- cGUGGCCua--UGCGUC-AU------UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 15142 0.67 0.533811
Target:  5'- aGCAacCCGGAcGCGCAGgccggcaAGCgCGGCgGa -3'
miRNA:   3'- -CGU--GGCCUaUGCGUCa------UUGgGCCGgC- -5'
30485 5' -56.4 NC_006548.1 + 27534 0.67 0.523094
Target:  5'- uCGCCGGcauCGcCGGUuacGGCCUGGCCu -3'
miRNA:   3'- cGUGGCCuauGC-GUCA---UUGGGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 12286 0.7 0.340902
Target:  5'- cGCACaGGGccugGCGCAGUuuauGCCCGGUa- -3'
miRNA:   3'- -CGUGgCCUa---UGCGUCAu---UGGGCCGgc -5'
30485 5' -56.4 NC_006548.1 + 36346 0.7 0.357808
Target:  5'- uGCGCUGGGcAUGCGGccgUCCGGCCu -3'
miRNA:   3'- -CGUGGCCUaUGCGUCauuGGGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 26243 0.68 0.440863
Target:  5'- uCGCCaGGUcuucaagugGCuGCAGgaGACCCGGCCGg -3'
miRNA:   3'- cGUGGcCUA---------UG-CGUCa-UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 17627 0.68 0.470888
Target:  5'- -gGCUGGAg--GCAGcucACCUGGCCGg -3'
miRNA:   3'- cgUGGCCUaugCGUCau-UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 36807 0.68 0.470888
Target:  5'- aGCGCCag--GCGCGGccuuaugcGCCUGGCCGg -3'
miRNA:   3'- -CGUGGccuaUGCGUCau------UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 33946 0.67 0.501918
Target:  5'- aGCgACCuGGAgguUGCGCAGcUGuaccguggcGCUCGGCCGu -3'
miRNA:   3'- -CG-UGG-CCU---AUGCGUC-AU---------UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 13306 0.67 0.501918
Target:  5'- gGCGCCGGuuugcccgcCGCAGgaGCgCGcGCCGa -3'
miRNA:   3'- -CGUGGCCuau------GCGUCauUGgGC-CGGC- -5'
30485 5' -56.4 NC_006548.1 + 17820 0.67 0.501918
Target:  5'- aGCGCCGGGgcaaauCGCGccGACCUGGUgGc -3'
miRNA:   3'- -CGUGGCCUau----GCGUcaUUGGGCCGgC- -5'
30485 5' -56.4 NC_006548.1 + 8201 0.66 0.577374
Target:  5'- aGUGCCGaGGUcaugGCGCAGUucGGCgaCGGCCu -3'
miRNA:   3'- -CGUGGC-CUA----UGCGUCA--UUGg-GCCGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.