miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30485 5' -56.4 NC_006548.1 + 20952 0.68 0.431098
Target:  5'- aGCACCucGGccGCcgGCuuuGUGACCUGGCCGu -3'
miRNA:   3'- -CGUGG--CCuaUG--CGu--CAUUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 1363 0.68 0.450752
Target:  5'- aCGCCGGuAUACaaCGG-AGCCCuGGCCGa -3'
miRNA:   3'- cGUGGCC-UAUGc-GUCaUUGGG-CCGGC- -5'
30485 5' -56.4 NC_006548.1 + 14029 0.68 0.470888
Target:  5'- aGgACCGGccccuCGUAGgcGCCCaccGGCCGa -3'
miRNA:   3'- -CgUGGCCuau--GCGUCauUGGG---CCGGC- -5'
30485 5' -56.4 NC_006548.1 + 1461 0.67 0.533811
Target:  5'- -aACUGGuucaGCAGUu-CCUGGCCGg -3'
miRNA:   3'- cgUGGCCuaugCGUCAuuGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 17276 0.66 0.566394
Target:  5'- cGCGCCGGGgaaguuccACuCGGUcagccaacgGGCCgGGCCGa -3'
miRNA:   3'- -CGUGGCCUa-------UGcGUCA---------UUGGgCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 28257 0.66 0.576274
Target:  5'- cCGCCGGAUcuuucagcacaucACGCAGgucucGCaCGGCCu -3'
miRNA:   3'- cGUGGCCUA-------------UGCGUCau---UGgGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 14208 0.66 0.577374
Target:  5'- -uGCCGGGUuCGCAGUcgaugguguACUCGGCg- -3'
miRNA:   3'- cgUGGCCUAuGCGUCAu--------UGGGCCGgc -5'
30485 5' -56.4 NC_006548.1 + 8201 0.66 0.577374
Target:  5'- aGUGCCGaGGUcaugGCGCAGUucGGCgaCGGCCu -3'
miRNA:   3'- -CGUGGC-CUA----UGCGUCA--UUGg-GCCGGc -5'
30485 5' -56.4 NC_006548.1 + 36922 0.67 0.494595
Target:  5'- aGCACaccguaggucuucguCGGAUACGCcacaccacacaccAGc-ACCCGGCCa -3'
miRNA:   3'- -CGUG---------------GCCUAUGCG-------------UCauUGGGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 14968 0.68 0.440863
Target:  5'- uCACCGGcagcAUAgGCGGUgGACCaggacaGGCCGa -3'
miRNA:   3'- cGUGGCC----UAUgCGUCA-UUGGg-----CCGGC- -5'
30485 5' -56.4 NC_006548.1 + 35922 0.68 0.450752
Target:  5'- cGCGCCGGcAUucuuCGCacGGgcACgCCGGUCGg -3'
miRNA:   3'- -CGUGGCC-UAu---GCG--UCauUG-GGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 27974 0.68 0.431098
Target:  5'- cGCGCCGGGaACGCG-----CUGGCCGa -3'
miRNA:   3'- -CGUGGCCUaUGCGUcauugGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 34749 0.68 0.421461
Target:  5'- uCGCCGaaGAUcACGUAGUGGCCgGuGCCGu -3'
miRNA:   3'- cGUGGC--CUA-UGCGUCAUUGGgC-CGGC- -5'
30485 5' -56.4 NC_006548.1 + 29281 0.69 0.402583
Target:  5'- cGCgGCCGGAU-CGcCAGUuGCCUuGGCCa -3'
miRNA:   3'- -CG-UGGCCUAuGC-GUCAuUGGG-CCGGc -5'
30485 5' -56.4 NC_006548.1 + 32870 0.69 0.393347
Target:  5'- uGCGCCGGc--CGCGGUGACgCUuGCCa -3'
miRNA:   3'- -CGUGGCCuauGCGUCAUUG-GGcCGGc -5'
30485 5' -56.4 NC_006548.1 + 33013 0.69 0.393347
Target:  5'- uGCACCGGGcGCGcCAGUugaaucgccGACgCGGUCa -3'
miRNA:   3'- -CGUGGCCUaUGC-GUCA---------UUGgGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 28079 0.7 0.357808
Target:  5'- cGCGCCGaaccGCgGCAGaAACUCGGCCGc -3'
miRNA:   3'- -CGUGGCcua-UG-CGUCaUUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 26342 0.7 0.340902
Target:  5'- cGCGCUGGAUGuCGguCAGcguuUCCGGCCGg -3'
miRNA:   3'- -CGUGGCCUAU-GC--GUCauu-GGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 32623 0.7 0.332668
Target:  5'- gGCGCaaaCGGccACGCGGUGAUCCGGuuuCCGg -3'
miRNA:   3'- -CGUG---GCCuaUGCGUCAUUGGGCC---GGC- -5'
30485 5' -56.4 NC_006548.1 + 28627 0.7 0.327798
Target:  5'- uGUACCGGugACgGUAGUcgcggguagcgccgcGACCUGGCCGg -3'
miRNA:   3'- -CGUGGCCuaUG-CGUCA---------------UUGGGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.