Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30485 | 5' | -56.4 | NC_006548.1 | + | 17276 | 0.66 | 0.566394 |
Target: 5'- cGCGCCGGGgaaguuccACuCGGUcagccaacgGGCCgGGCCGa -3' miRNA: 3'- -CGUGGCCUa-------UGcGUCA---------UUGGgCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 14208 | 0.66 | 0.577374 |
Target: 5'- -uGCCGGGUuCGCAGUcgaugguguACUCGGCg- -3' miRNA: 3'- cgUGGCCUAuGCGUCAu--------UGGGCCGgc -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 35408 | 0.66 | 0.566394 |
Target: 5'- -aACCuGGUAUcccgagaaaGCAGUGaucaGCCUGGCCGg -3' miRNA: 3'- cgUGGcCUAUG---------CGUCAU----UGGGCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 23804 | 0.66 | 0.566394 |
Target: 5'- cCGCCGGccAUGC-CGGUggcgcGACCCGGCa- -3' miRNA: 3'- cGUGGCC--UAUGcGUCA-----UUGGGCCGgc -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 6896 | 0.66 | 0.577374 |
Target: 5'- gGCGCCaauagcugggauGGAUGCagGCGGUAGCUgugcagcgcgCGGCUGa -3' miRNA: 3'- -CGUGG------------CCUAUG--CGUCAUUGG----------GCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 34816 | 0.66 | 0.585088 |
Target: 5'- cGCAUC---UGCGCAGUGuaccggggcugaccAgCCGGCCGg -3' miRNA: 3'- -CGUGGccuAUGCGUCAU--------------UgGGCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 19003 | 0.66 | 0.588401 |
Target: 5'- -aGCCGGAacugGCGauuu--CCCGGCCGc -3' miRNA: 3'- cgUGGCCUa---UGCgucauuGGGCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 24234 | 0.66 | 0.588401 |
Target: 5'- aGCACCaGAagauCGCGGUcgaaacccagGACgCGGCCa -3' miRNA: 3'- -CGUGGcCUau--GCGUCA----------UUGgGCCGGc -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 5044 | 0.66 | 0.588401 |
Target: 5'- uGCACCaGAUcgcgGCGCAGgguggauuuACCgGcGCCGg -3' miRNA: 3'- -CGUGGcCUA----UGCGUCau-------UGGgC-CGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 22142 | 0.66 | 0.588401 |
Target: 5'- aCAUCGGcgaaGCGCGGcUGaacaucGCUCGGCCGg -3' miRNA: 3'- cGUGGCCua--UGCGUC-AU------UGGGCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 28257 | 0.66 | 0.576274 |
Target: 5'- cCGCCGGAUcuuucagcacaucACGCAGgucucGCaCGGCCu -3' miRNA: 3'- cGUGGCCUA-------------UGCGUCau---UGgGCCGGc -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 8201 | 0.66 | 0.577374 |
Target: 5'- aGUGCCGaGGUcaugGCGCAGUucGGCgaCGGCCu -3' miRNA: 3'- -CGUGGC-CUA----UGCGUCA--UUGg-GCCGGc -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 27534 | 0.67 | 0.523094 |
Target: 5'- uCGCCGGcauCGcCGGUuacGGCCUGGCCu -3' miRNA: 3'- cGUGGCCuauGC-GUCA---UUGGGCCGGc -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 29367 | 0.67 | 0.481126 |
Target: 5'- aUACCGGAU-CGCagagccaaAGUGAgCUGGUCGg -3' miRNA: 3'- cGUGGCCUAuGCG--------UCAUUgGGCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 36922 | 0.67 | 0.494595 |
Target: 5'- aGCACaccguaggucuucguCGGAUACGCcacaccacacaccAGc-ACCCGGCCa -3' miRNA: 3'- -CGUG---------------GCCUAUGCG-------------UCauUGGGCCGGc -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 1461 | 0.67 | 0.533811 |
Target: 5'- -aACUGGuucaGCAGUu-CCUGGCCGg -3' miRNA: 3'- cgUGGCCuaugCGUCAuuGGGCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 13306 | 0.67 | 0.501918 |
Target: 5'- gGCGCCGGuuugcccgcCGCAGgaGCgCGcGCCGa -3' miRNA: 3'- -CGUGGCCuau------GCGUCauUGgGC-CGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 15142 | 0.67 | 0.533811 |
Target: 5'- aGCAacCCGGAcGCGCAGgccggcaAGCgCGGCgGa -3' miRNA: 3'- -CGU--GGCCUaUGCGUCa------UUGgGCCGgC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 33946 | 0.67 | 0.501918 |
Target: 5'- aGCgACCuGGAgguUGCGCAGcUGuaccguggcGCUCGGCCGu -3' miRNA: 3'- -CG-UGG-CCU---AUGCGUC-AU---------UGGGCCGGC- -5' |
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30485 | 5' | -56.4 | NC_006548.1 | + | 17820 | 0.67 | 0.501918 |
Target: 5'- aGCGCCGGGgcaaauCGCGccGACCUGGUgGc -3' miRNA: 3'- -CGUGGCCUau----GCGUcaUUGGGCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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