miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30485 5' -56.4 NC_006548.1 + 34911 1.12 0.000342
Target:  5'- cGCACCGGAUACGCAGUAACCCGGCCGg -3'
miRNA:   3'- -CGUGGCCUAUGCGUCAUUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 217 0.79 0.090411
Target:  5'- aGCACCGGAgacaACGCcgaaccgaucAGUugggccuuuuuGACCCGGCCGa -3'
miRNA:   3'- -CGUGGCCUa---UGCG----------UCA-----------UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 6512 0.73 0.21488
Target:  5'- cGCGCCaGGGcgGCGCGGguuacgGGCUCGGUCGa -3'
miRNA:   3'- -CGUGG-CCUa-UGCGUCa-----UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 20864 0.73 0.238921
Target:  5'- uCACCGGAgccuucugGCGCGGcAGCaggCGGCCGg -3'
miRNA:   3'- cGUGGCCUa-------UGCGUCaUUGg--GCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 32963 0.71 0.316641
Target:  5'- cGCGCCcGGUGCaGCGGcgcuGgCCGGCCGg -3'
miRNA:   3'- -CGUGGcCUAUG-CGUCau--UgGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 28627 0.7 0.327798
Target:  5'- uGUACCGGugACgGUAGUcgcggguagcgccgcGACCUGGCCGg -3'
miRNA:   3'- -CGUGGCCuaUG-CGUCA---------------UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 32623 0.7 0.332668
Target:  5'- gGCGCaaaCGGccACGCGGUGAUCCGGuuuCCGg -3'
miRNA:   3'- -CGUG---GCCuaUGCGUCAUUGGGCC---GGC- -5'
30485 5' -56.4 NC_006548.1 + 26342 0.7 0.340902
Target:  5'- cGCGCUGGAUGuCGguCAGcguuUCCGGCCGg -3'
miRNA:   3'- -CGUGGCCUAU-GC--GUCauu-GGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 12286 0.7 0.340902
Target:  5'- cGCACaGGGccugGCGCAGUuuauGCCCGGUa- -3'
miRNA:   3'- -CGUGgCCUa---UGCGUCAu---UGGGCCGgc -5'
30485 5' -56.4 NC_006548.1 + 28079 0.7 0.357808
Target:  5'- cGCGCCGaaccGCgGCAGaAACUCGGCCGc -3'
miRNA:   3'- -CGUGGCcua-UG-CGUCaUUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 36346 0.7 0.357808
Target:  5'- uGCGCUGGGcAUGCGGccgUCCGGCCu -3'
miRNA:   3'- -CGUGGCCUaUGCGUCauuGGGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 33013 0.69 0.393347
Target:  5'- uGCACCGGGcGCGcCAGUugaaucgccGACgCGGUCa -3'
miRNA:   3'- -CGUGGCCUaUGC-GUCA---------UUGgGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 32870 0.69 0.393347
Target:  5'- uGCGCCGGc--CGCGGUGACgCUuGCCa -3'
miRNA:   3'- -CGUGGCCuauGCGUCAUUG-GGcCGGc -5'
30485 5' -56.4 NC_006548.1 + 29281 0.69 0.402583
Target:  5'- cGCgGCCGGAU-CGcCAGUuGCCUuGGCCa -3'
miRNA:   3'- -CG-UGGCCUAuGC-GUCAuUGGG-CCGGc -5'
30485 5' -56.4 NC_006548.1 + 34749 0.68 0.421461
Target:  5'- uCGCCGaaGAUcACGUAGUGGCCgGuGCCGu -3'
miRNA:   3'- cGUGGC--CUA-UGCGUCAUUGGgC-CGGC- -5'
30485 5' -56.4 NC_006548.1 + 20952 0.68 0.431098
Target:  5'- aGCACCucGGccGCcgGCuuuGUGACCUGGCCGu -3'
miRNA:   3'- -CGUGG--CCuaUG--CGu--CAUUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 27974 0.68 0.431098
Target:  5'- cGCGCCGGGaACGCG-----CUGGCCGa -3'
miRNA:   3'- -CGUGGCCUaUGCGUcauugGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 14968 0.68 0.440863
Target:  5'- uCACCGGcagcAUAgGCGGUgGACCaggacaGGCCGa -3'
miRNA:   3'- cGUGGCC----UAUgCGUCA-UUGGg-----CCGGC- -5'
30485 5' -56.4 NC_006548.1 + 26243 0.68 0.440863
Target:  5'- uCGCCaGGUcuucaagugGCuGCAGgaGACCCGGCCGg -3'
miRNA:   3'- cGUGGcCUA---------UG-CGUCa-UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 35922 0.68 0.450752
Target:  5'- cGCGCCGGcAUucuuCGCacGGgcACgCCGGUCGg -3'
miRNA:   3'- -CGUGGCC-UAu---GCG--UCauUG-GGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.