miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30485 5' -56.4 NC_006548.1 + 36922 0.67 0.494595
Target:  5'- aGCACaccguaggucuucguCGGAUACGCcacaccacacaccAGc-ACCCGGCCa -3'
miRNA:   3'- -CGUG---------------GCCUAUGCG-------------UCauUGGGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 36807 0.68 0.470888
Target:  5'- aGCGCCag--GCGCGGccuuaugcGCCUGGCCGg -3'
miRNA:   3'- -CGUGGccuaUGCGUCau------UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 36346 0.7 0.357808
Target:  5'- uGCGCUGGGcAUGCGGccgUCCGGCCu -3'
miRNA:   3'- -CGUGGCCUaUGCGUCauuGGGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 35922 0.68 0.450752
Target:  5'- cGCGCCGGcAUucuuCGCacGGgcACgCCGGUCGg -3'
miRNA:   3'- -CGUGGCC-UAu---GCG--UCauUG-GGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 35408 0.66 0.566394
Target:  5'- -aACCuGGUAUcccgagaaaGCAGUGaucaGCCUGGCCGg -3'
miRNA:   3'- cgUGGcCUAUG---------CGUCAU----UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 34911 1.12 0.000342
Target:  5'- cGCACCGGAUACGCAGUAACCCGGCCGg -3'
miRNA:   3'- -CGUGGCCUAUGCGUCAUUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 34816 0.66 0.585088
Target:  5'- cGCAUC---UGCGCAGUGuaccggggcugaccAgCCGGCCGg -3'
miRNA:   3'- -CGUGGccuAUGCGUCAU--------------UgGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 34749 0.68 0.421461
Target:  5'- uCGCCGaaGAUcACGUAGUGGCCgGuGCCGu -3'
miRNA:   3'- cGUGGC--CUA-UGCGUCAUUGGgC-CGGC- -5'
30485 5' -56.4 NC_006548.1 + 33946 0.67 0.501918
Target:  5'- aGCgACCuGGAgguUGCGCAGcUGuaccguggcGCUCGGCCGu -3'
miRNA:   3'- -CG-UGG-CCU---AUGCGUC-AU---------UGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 33013 0.69 0.393347
Target:  5'- uGCACCGGGcGCGcCAGUugaaucgccGACgCGGUCa -3'
miRNA:   3'- -CGUGGCCUaUGC-GUCA---------UUGgGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 32963 0.71 0.316641
Target:  5'- cGCGCCcGGUGCaGCGGcgcuGgCCGGCCGg -3'
miRNA:   3'- -CGUGGcCUAUG-CGUCau--UgGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 32870 0.69 0.393347
Target:  5'- uGCGCCGGc--CGCGGUGACgCUuGCCa -3'
miRNA:   3'- -CGUGGCCuauGCGUCAUUG-GGcCGGc -5'
30485 5' -56.4 NC_006548.1 + 32623 0.7 0.332668
Target:  5'- gGCGCaaaCGGccACGCGGUGAUCCGGuuuCCGg -3'
miRNA:   3'- -CGUG---GCCuaUGCGUCAUUGGGCC---GGC- -5'
30485 5' -56.4 NC_006548.1 + 29367 0.67 0.481126
Target:  5'- aUACCGGAU-CGCagagccaaAGUGAgCUGGUCGg -3'
miRNA:   3'- cGUGGCCUAuGCG--------UCAUUgGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 29281 0.69 0.402583
Target:  5'- cGCgGCCGGAU-CGcCAGUuGCCUuGGCCa -3'
miRNA:   3'- -CG-UGGCCUAuGC-GUCAuUGGG-CCGGc -5'
30485 5' -56.4 NC_006548.1 + 28627 0.7 0.327798
Target:  5'- uGUACCGGugACgGUAGUcgcggguagcgccgcGACCUGGCCGg -3'
miRNA:   3'- -CGUGGCCuaUG-CGUCA---------------UUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 28257 0.66 0.576274
Target:  5'- cCGCCGGAUcuuucagcacaucACGCAGgucucGCaCGGCCu -3'
miRNA:   3'- cGUGGCCUA-------------UGCGUCau---UGgGCCGGc -5'
30485 5' -56.4 NC_006548.1 + 28079 0.7 0.357808
Target:  5'- cGCGCCGaaccGCgGCAGaAACUCGGCCGc -3'
miRNA:   3'- -CGUGGCcua-UG-CGUCaUUGGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 27974 0.68 0.431098
Target:  5'- cGCGCCGGGaACGCG-----CUGGCCGa -3'
miRNA:   3'- -CGUGGCCUaUGCGUcauugGGCCGGC- -5'
30485 5' -56.4 NC_006548.1 + 27534 0.67 0.523094
Target:  5'- uCGCCGGcauCGcCGGUuacGGCCUGGCCu -3'
miRNA:   3'- cGUGGCCuauGC-GUCA---UUGGGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.