miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30490 5' -56.7 NC_006548.1 + 312 1.1 0.000326
Target:  5'- aAACAAACGUGAUGCCGGCCCAGCGCCg -3'
miRNA:   3'- -UUGUUUGCACUACGGCCGGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 33043 0.8 0.059023
Target:  5'- uACAAGCGgGA-GCCGGCcggCCAGCGCCg -3'
miRNA:   3'- uUGUUUGCaCUaCGGCCG---GGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 29870 0.77 0.104588
Target:  5'- cAACAAGCGUGGuugggcugcgcugcaUGaCUGGUCCGGCGCUg -3'
miRNA:   3'- -UUGUUUGCACU---------------AC-GGCCGGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 36653 0.74 0.158924
Target:  5'- cGCGAGCaccgcGGUGCCGGCCgCGGCGUUg -3'
miRNA:   3'- uUGUUUGca---CUACGGCCGG-GUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 6866 0.72 0.221444
Target:  5'- uGCAGGCugcgcaGUucGGUGaCCGGCuCCGGCGCCa -3'
miRNA:   3'- uUGUUUG------CA--CUAC-GGCCG-GGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 24381 0.72 0.221444
Target:  5'- gGGCAGGCGcuc-GCCGGCCCAGacccgGCCc -3'
miRNA:   3'- -UUGUUUGCacuaCGGCCGGGUCg----CGG- -5'
30490 5' -56.7 NC_006548.1 + 22074 0.72 0.227507
Target:  5'- gGAUGGugGcGGUGCgaCGGCCCAGCacGCCg -3'
miRNA:   3'- -UUGUUugCaCUACG--GCCGGGUCG--CGG- -5'
30490 5' -56.7 NC_006548.1 + 7686 0.71 0.259947
Target:  5'- uGCAggUucucgGUGGUGuuGGCCagcaGGCGCCc -3'
miRNA:   3'- uUGUuuG-----CACUACggCCGGg---UCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 34955 0.69 0.319545
Target:  5'- ------gGUGAcgaGCUGGCCCuGCGCCu -3'
miRNA:   3'- uuguuugCACUa--CGGCCGGGuCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 28518 0.69 0.319545
Target:  5'- gGACcAGCGUGAcGCaguccuGCUCGGCGCCg -3'
miRNA:   3'- -UUGuUUGCACUaCGgc----CGGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 25546 0.69 0.327677
Target:  5'- aGGCAuGCGUaGAcGUCuGCCCAGCGCg -3'
miRNA:   3'- -UUGUuUGCA-CUaCGGcCGGGUCGCGg -5'
30490 5' -56.7 NC_006548.1 + 11899 0.69 0.330973
Target:  5'- cGCGAACGUGAacagacugcgaucgaUccaauaGCCGGCCaCcGCGCCc -3'
miRNA:   3'- uUGUUUGCACU---------------A------CGGCCGG-GuCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 29639 0.69 0.335961
Target:  5'- cGCAggUGcUGGUGCCGcuGCCagCGGUGCCg -3'
miRNA:   3'- uUGUuuGC-ACUACGGC--CGG--GUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 36546 0.69 0.352984
Target:  5'- gGACAAGCGUGAcGCUgacgcuggucaGGCCCcG-GCCg -3'
miRNA:   3'- -UUGUUUGCACUaCGG-----------CCGGGuCgCGG- -5'
30490 5' -56.7 NC_006548.1 + 32846 0.68 0.360841
Target:  5'- cAGCAGcUG-GAUGuCCGGCCacaccggCAGCGCCc -3'
miRNA:   3'- -UUGUUuGCaCUAC-GGCCGG-------GUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 24346 0.68 0.361722
Target:  5'- uGGCAAAC-UGAgcagGCCGGUCUGG-GCCg -3'
miRNA:   3'- -UUGUUUGcACUa---CGGCCGGGUCgCGG- -5'
30490 5' -56.7 NC_006548.1 + 7188 0.68 0.369713
Target:  5'- cAGCuuGCGguacagcGAUGCCagcgacaGGCCCAGCucuGCCg -3'
miRNA:   3'- -UUGuuUGCa------CUACGG-------CCGGGUCG---CGG- -5'
30490 5' -56.7 NC_006548.1 + 2239 0.68 0.379643
Target:  5'- -gUAGGCGUa--GCCGGUcagcuCCGGCGCCg -3'
miRNA:   3'- uuGUUUGCAcuaCGGCCG-----GGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 4209 0.68 0.39815
Target:  5'- gAGCAccGACGUcugaucaauugGaAUGCCGGCCUuGCGCa -3'
miRNA:   3'- -UUGU--UUGCA-----------C-UACGGCCGGGuCGCGg -5'
30490 5' -56.7 NC_006548.1 + 36413 0.68 0.407618
Target:  5'- uGCAGGcCG-GAcgGCCGcauGCCCAGCGCa -3'
miRNA:   3'- uUGUUU-GCaCUa-CGGC---CGGGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.