miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30490 5' -56.7 NC_006548.1 + 312 1.1 0.000326
Target:  5'- aAACAAACGUGAUGCCGGCCCAGCGCCg -3'
miRNA:   3'- -UUGUUUGCACUACGGCCGGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 636 0.66 0.4987
Target:  5'- gAACAGGCG----GCCGGCCuggaaCAGCuGCCg -3'
miRNA:   3'- -UUGUUUGCacuaCGGCCGG-----GUCG-CGG- -5'
30490 5' -56.7 NC_006548.1 + 2239 0.68 0.379643
Target:  5'- -gUAGGCGUa--GCCGGUcagcuCCGGCGCCg -3'
miRNA:   3'- uuGUUUGCAcuaCGGCCG-----GGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 3587 0.66 0.509395
Target:  5'- uGACGcAAC-UGGUGCCGGgCUGGUgGCCg -3'
miRNA:   3'- -UUGU-UUGcACUACGGCCgGGUCG-CGG- -5'
30490 5' -56.7 NC_006548.1 + 4209 0.68 0.39815
Target:  5'- gAGCAccGACGUcugaucaauugGaAUGCCGGCCUuGCGCa -3'
miRNA:   3'- -UUGU--UUGCA-----------C-UACGGCCGGGuCGCGg -5'
30490 5' -56.7 NC_006548.1 + 5138 0.66 0.488107
Target:  5'- uGCGGugGUGG-GUgaGUCCGGCGCCg -3'
miRNA:   3'- uUGUUugCACUaCGgcCGGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 6866 0.72 0.221444
Target:  5'- uGCAGGCugcgcaGUucGGUGaCCGGCuCCGGCGCCa -3'
miRNA:   3'- uUGUUUG------CA--CUAC-GGCCG-GGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 7188 0.68 0.369713
Target:  5'- cAGCuuGCGguacagcGAUGCCagcgacaGGCCCAGCucuGCCg -3'
miRNA:   3'- -UUGuuUGCa------CUACGG-------CCGGGUCG---CGG- -5'
30490 5' -56.7 NC_006548.1 + 7370 0.66 0.520184
Target:  5'- cAUGGcCGUGucUGCCGucaucaCCCAGCGCCu -3'
miRNA:   3'- uUGUUuGCACu-ACGGCc-----GGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 7686 0.71 0.259947
Target:  5'- uGCAggUucucgGUGGUGuuGGCCagcaGGCGCCc -3'
miRNA:   3'- uUGUuuG-----CACUACggCCGGg---UCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 8439 0.66 0.509395
Target:  5'- uAGCGG--GUGAUGuuGGCCgGGCucucGCCu -3'
miRNA:   3'- -UUGUUugCACUACggCCGGgUCG----CGG- -5'
30490 5' -56.7 NC_006548.1 + 8618 0.66 0.524526
Target:  5'- uGACGuuucCGUGGUGCCaggccagggacuccaGGCCCgcccgcAGCGCg -3'
miRNA:   3'- -UUGUuu--GCACUACGG---------------CCGGG------UCGCGg -5'
30490 5' -56.7 NC_006548.1 + 11899 0.69 0.330973
Target:  5'- cGCGAACGUGAacagacugcgaucgaUccaauaGCCGGCCaCcGCGCCc -3'
miRNA:   3'- uUGUUUGCACU---------------A------CGGCCGG-GuCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 13377 0.66 0.47762
Target:  5'- cGGCGcGCGcuccUGcgGCgGGCaaaCCGGCGCCg -3'
miRNA:   3'- -UUGUuUGC----ACuaCGgCCG---GGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 16127 0.67 0.417225
Target:  5'- aAGCAGcAUG-GAUcGCCaGaCCCAGCGCCc -3'
miRNA:   3'- -UUGUU-UGCaCUA-CGGcC-GGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 16701 0.66 0.47762
Target:  5'- -uCGAGgGgGA-GCCGuGCCCuGCGCCu -3'
miRNA:   3'- uuGUUUgCaCUaCGGC-CGGGuCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 19655 0.67 0.417225
Target:  5'- uACAcGCGUGAacGCUGGUUUAGUGCUa -3'
miRNA:   3'- uUGUuUGCACUa-CGGCCGGGUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 20049 0.67 0.446856
Target:  5'- uGACGAGCGgg--GCCucGCUgAGCGCCg -3'
miRNA:   3'- -UUGUUUGCacuaCGGc-CGGgUCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 20471 0.66 0.488107
Target:  5'- gGACAAcugccauUGUGGgaugagcugGUCGGCCCguucGGCGCCu -3'
miRNA:   3'- -UUGUUu------GCACUa--------CGGCCGGG----UCGCGG- -5'
30490 5' -56.7 NC_006548.1 + 21049 0.68 0.407618
Target:  5'- uGCAAugGCGUGAgcacUGCCGaaGCUCAGguCGCCg -3'
miRNA:   3'- uUGUU--UGCACU----ACGGC--CGGGUC--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.