Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30494 | 3' | -55.4 | NC_006548.1 | + | 16305 | 0.68 | 0.493807 |
Target: 5'- gGUGGCGAUCucCCGGCcaaGGgCGGGCu -3' miRNA: 3'- -CGCCGCUAGuaGGCCGag-UUgGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 27586 | 0.67 | 0.525971 |
Target: 5'- cCGGCGAUg--CCGGCgaacagCAGCCccuGGACc -3' miRNA: 3'- cGCCGCUAguaGGCCGa-----GUUGG---UCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 28695 | 0.67 | 0.536871 |
Target: 5'- aGCGGCGAcCua-CGGCaagGGCCGGGCu -3' miRNA: 3'- -CGCCGCUaGuagGCCGag-UUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 8377 | 0.67 | 0.547847 |
Target: 5'- uGUGaGCGaAUCggCCGucuucucuacGCUCGGCCAGGCc -3' miRNA: 3'- -CGC-CGC-UAGuaGGC----------CGAGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 18760 | 0.67 | 0.547847 |
Target: 5'- uGCGGCagGGUCG-CUaGCUCGGCCAguGACa -3' miRNA: 3'- -CGCCG--CUAGUaGGcCGAGUUGGU--CUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 35426 | 0.67 | 0.558893 |
Target: 5'- aGCaGUGAUCAgcCUGGCcggCGACCAGGu -3' miRNA: 3'- -CGcCGCUAGUa-GGCCGa--GUUGGUCUg -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 12830 | 0.67 | 0.558893 |
Target: 5'- aGCGGCGcgguaaGUCCGGUgUGGCuCGGGCg -3' miRNA: 3'- -CGCCGCuag---UAGGCCGaGUUG-GUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 22154 | 0.66 | 0.570001 |
Target: 5'- cGCGGCuGAaCAUC--GCUCGGCCGGGg -3' miRNA: 3'- -CGCCG-CUaGUAGgcCGAGUUGGUCUg -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 24592 | 0.66 | 0.570001 |
Target: 5'- -gGGCGAUCugaaagCCGGCgacuucgugaAGCUGGACg -3' miRNA: 3'- cgCCGCUAGua----GGCCGag--------UUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 32713 | 0.66 | 0.581162 |
Target: 5'- cGCaGCGAUCG-CCGuuGCUCGACUcccGACg -3' miRNA: 3'- -CGcCGCUAGUaGGC--CGAGUUGGu--CUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 31717 | 0.66 | 0.581162 |
Target: 5'- -gGGCGAggggccgcCAUCCaGGC-CAuCCAGGCg -3' miRNA: 3'- cgCCGCUa-------GUAGG-CCGaGUuGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 16647 | 0.66 | 0.581162 |
Target: 5'- uGUaGCGGUCGUCgCGGCcguagaUCAGCuCGGAUa -3' miRNA: 3'- -CGcCGCUAGUAG-GCCG------AGUUG-GUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 14206 | 0.66 | 0.591245 |
Target: 5'- gGCGGaaaucauCGAUCucCCGGCU--ACCGGACc -3' miRNA: 3'- -CGCC-------GCUAGuaGGCCGAguUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 14395 | 0.66 | 0.592367 |
Target: 5'- aCGGCuGggCAgcucgCCGGCuUCGGCCuGGCu -3' miRNA: 3'- cGCCG-CuaGUa----GGCCG-AGUUGGuCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 2376 | 0.66 | 0.592367 |
Target: 5'- cCGGCGGUuuucCAUCCGaGC-CGGCUGGAa -3' miRNA: 3'- cGCCGCUA----GUAGGC-CGaGUUGGUCUg -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 22320 | 0.66 | 0.600233 |
Target: 5'- -gGGCGGUCAggCCGaagguggugccguuGCgggugUCGGCCAGGCg -3' miRNA: 3'- cgCCGCUAGUa-GGC--------------CG-----AGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 31525 | 0.66 | 0.603608 |
Target: 5'- aGCGGCGGccaguacgUAUgCGGCUCcguaaucuAUCAGGCa -3' miRNA: 3'- -CGCCGCUa-------GUAgGCCGAGu-------UGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 19104 | 0.66 | 0.603608 |
Target: 5'- aCGGCGAgCAcuggaCGuGCUCAACgCGGGCa -3' miRNA: 3'- cGCCGCUaGUag---GC-CGAGUUG-GUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 28405 | 0.66 | 0.603608 |
Target: 5'- aUGGCaagGGUUcaGUCCGcGCUCGACgAGGCc -3' miRNA: 3'- cGCCG---CUAG--UAGGC-CGAGUUGgUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 36997 | 0.66 | 0.614875 |
Target: 5'- aGCGGUaccagccugaaGAagUCGUacaCCGGCUUGACCGGcACg -3' miRNA: 3'- -CGCCG-----------CU--AGUA---GGCCGAGUUGGUC-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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