miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 3' -55.4 NC_006548.1 + 1155 1.1 0.000487
Target:  5'- uGCGGCGAUCAUCCGGCUCAACCAGACc -3'
miRNA:   3'- -CGCCGCUAGUAGGCCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 16457 0.76 0.14867
Target:  5'- gGCGGUGAUCGcCCGa-UCGACCAGGCu -3'
miRNA:   3'- -CGCCGCUAGUaGGCcgAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 3283 0.76 0.161781
Target:  5'- uGCaGGUGAUCA-CCaGCUCGAUCAGGCu -3'
miRNA:   3'- -CG-CCGCUAGUaGGcCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 14324 0.76 0.161781
Target:  5'- ----gGGUCAUCCGGCcaUCGGCCAGGCg -3'
miRNA:   3'- cgccgCUAGUAGGCCG--AGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 13576 0.73 0.250494
Target:  5'- gGCGGCGG-CAagCUGcuGCUCAACCAGAUc -3'
miRNA:   3'- -CGCCGCUaGUa-GGC--CGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 20847 0.71 0.316175
Target:  5'- cGCGGCag-CAggcggCCGGcCUUGACCAGGCc -3'
miRNA:   3'- -CGCCGcuaGUa----GGCC-GAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 33665 0.71 0.316175
Target:  5'- uGCGuGCGA-CGUC--GCUCGGCCGGACa -3'
miRNA:   3'- -CGC-CGCUaGUAGgcCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 11970 0.71 0.324225
Target:  5'- -aGGaCGAUCAgcgagCGGCgCAGCCAGGCa -3'
miRNA:   3'- cgCC-GCUAGUag---GCCGaGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 7267 0.7 0.349285
Target:  5'- cCGGCGcUCuguagcugCCGGUcgaggUCAACCAGGCg -3'
miRNA:   3'- cGCCGCuAGua------GGCCG-----AGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 20012 0.7 0.366743
Target:  5'- cGCGGCGAUC-UCCugcaggauGGCcUCGgugaacuccACCGGGCg -3'
miRNA:   3'- -CGCCGCUAGuAGG--------CCG-AGU---------UGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 36286 0.7 0.372994
Target:  5'- cGCGGCGG-CAcugagcgaugcagaUCUGGCgcagcugCAGCCAGAg -3'
miRNA:   3'- -CGCCGCUaGU--------------AGGCCGa------GUUGGUCUg -5'
30494 3' -55.4 NC_006548.1 + 35514 0.7 0.375695
Target:  5'- cGUGGCaagGAUCGcggCCuGCUgGACCAGGCg -3'
miRNA:   3'- -CGCCG---CUAGUa--GGcCGAgUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 32464 0.7 0.394035
Target:  5'- gGCGGCGA-----CGGCUgcCGGCCAGGCu -3'
miRNA:   3'- -CGCCGCUaguagGCCGA--GUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 4488 0.7 0.394035
Target:  5'- cGCGGCGAUgaAUCUGGCggugCAugUcGGCg -3'
miRNA:   3'- -CGCCGCUAg-UAGGCCGa---GUugGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 35656 0.69 0.441337
Target:  5'- uUGGCGccacUCAguuccuuUCCcGCUCGACCGGACu -3'
miRNA:   3'- cGCCGCu---AGU-------AGGcCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 13402 0.69 0.442336
Target:  5'- aGCGGCG-UCAcUCCGGCggaCAuCCuGGCc -3'
miRNA:   3'- -CGCCGCuAGU-AGGCCGa--GUuGGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 27417 0.68 0.461549
Target:  5'- cCGGaaaugcuCGGUCAacugccgcUCCuGCUCGGCCAGGCg -3'
miRNA:   3'- cGCC-------GCUAGU--------AGGcCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 35430 0.68 0.462573
Target:  5'- uUGaGCGcUCGUcgccaCCGGCUCAuCCAGGCu -3'
miRNA:   3'- cGC-CGCuAGUA-----GGCCGAGUuGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 21631 0.68 0.46977
Target:  5'- cGCGGCagaaccucgucggaGAUCAUCCGGC-CGuuGCggUAGGCg -3'
miRNA:   3'- -CGCCG--------------CUAGUAGGCCGaGU--UG--GUCUG- -5'
30494 3' -55.4 NC_006548.1 + 22285 0.68 0.472872
Target:  5'- uGgGGUGAUCgcguGUCCGGUUCGAUCGccGAUc -3'
miRNA:   3'- -CgCCGCUAG----UAGGCCGAGUUGGU--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.