miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 3' -55.4 NC_006548.1 + 1155 1.1 0.000487
Target:  5'- uGCGGCGAUCAUCCGGCUCAACCAGACc -3'
miRNA:   3'- -CGCCGCUAGUAGGCCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 2376 0.66 0.592367
Target:  5'- cCGGCGGUuuucCAUCCGaGC-CGGCUGGAa -3'
miRNA:   3'- cGCCGCUA----GUAGGC-CGaGUUGGUCUg -5'
30494 3' -55.4 NC_006548.1 + 3283 0.76 0.161781
Target:  5'- uGCaGGUGAUCA-CCaGCUCGAUCAGGCu -3'
miRNA:   3'- -CG-CCGCUAGUaGGcCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 4488 0.7 0.394035
Target:  5'- cGCGGCGAUgaAUCUGGCggugCAugUcGGCg -3'
miRNA:   3'- -CGCCGCUAg-UAGGCCGa---GUugGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 7144 0.66 0.614875
Target:  5'- cUGGUGAUCAgcaCGGCguugauccacUCGGCCcGACa -3'
miRNA:   3'- cGCCGCUAGUag-GCCG----------AGUUGGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 7267 0.7 0.349285
Target:  5'- cCGGCGcUCuguagcugCCGGUcgaggUCAACCAGGCg -3'
miRNA:   3'- cGCCGCuAGua------GGCCG-----AGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 8377 0.67 0.547847
Target:  5'- uGUGaGCGaAUCggCCGucuucucuacGCUCGGCCAGGCc -3'
miRNA:   3'- -CGC-CGC-UAGuaGGC----------CGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 11970 0.71 0.324225
Target:  5'- -aGGaCGAUCAgcgagCGGCgCAGCCAGGCa -3'
miRNA:   3'- cgCC-GCUAGUag---GCCGaGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 12516 0.66 0.614875
Target:  5'- aGCuGGCcucggCAUCCGGCgcCGACCAG-Cu -3'
miRNA:   3'- -CG-CCGcua--GUAGGCCGa-GUUGGUCuG- -5'
30494 3' -55.4 NC_006548.1 + 12830 0.67 0.558893
Target:  5'- aGCGGCGcgguaaGUCCGGUgUGGCuCGGGCg -3'
miRNA:   3'- -CGCCGCuag---UAGGCCGaGUUG-GUCUG- -5'
30494 3' -55.4 NC_006548.1 + 13402 0.69 0.442336
Target:  5'- aGCGGCG-UCAcUCCGGCggaCAuCCuGGCc -3'
miRNA:   3'- -CGCCGCuAGU-AGGCCGa--GUuGGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 13576 0.73 0.250494
Target:  5'- gGCGGCGG-CAagCUGcuGCUCAACCAGAUc -3'
miRNA:   3'- -CGCCGCUaGUa-GGC--CGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 14206 0.66 0.591245
Target:  5'- gGCGGaaaucauCGAUCucCCGGCU--ACCGGACc -3'
miRNA:   3'- -CGCC-------GCUAGuaGGCCGAguUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 14324 0.76 0.161781
Target:  5'- ----gGGUCAUCCGGCcaUCGGCCAGGCg -3'
miRNA:   3'- cgccgCUAGUAGGCCG--AGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 14395 0.66 0.592367
Target:  5'- aCGGCuGggCAgcucgCCGGCuUCGGCCuGGCu -3'
miRNA:   3'- cGCCG-CuaGUa----GGCCG-AGUUGGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 16305 0.68 0.493807
Target:  5'- gGUGGCGAUCucCCGGCcaaGGgCGGGCu -3'
miRNA:   3'- -CGCCGCUAGuaGGCCGag-UUgGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 16457 0.76 0.14867
Target:  5'- gGCGGUGAUCGcCCGa-UCGACCAGGCu -3'
miRNA:   3'- -CGCCGCUAGUaGGCcgAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 16647 0.66 0.581162
Target:  5'- uGUaGCGGUCGUCgCGGCcguagaUCAGCuCGGAUa -3'
miRNA:   3'- -CGcCGCUAGUAG-GCCG------AGUUG-GUCUG- -5'
30494 3' -55.4 NC_006548.1 + 17358 0.66 0.626157
Target:  5'- uGCGGaacaccuuuUCAUCCcGCUCGGCCuuGGCg -3'
miRNA:   3'- -CGCCgcu------AGUAGGcCGAGUUGGu-CUG- -5'
30494 3' -55.4 NC_006548.1 + 18760 0.67 0.547847
Target:  5'- uGCGGCagGGUCG-CUaGCUCGGCCAguGACa -3'
miRNA:   3'- -CGCCG--CUAGUaGGcCGAGUUGGU--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.