Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30494 | 3' | -55.4 | NC_006548.1 | + | 28405 | 0.66 | 0.603608 |
Target: 5'- aUGGCaagGGUUcaGUCCGcGCUCGACgAGGCc -3' miRNA: 3'- cGCCG---CUAG--UAGGC-CGAGUUGgUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 35426 | 0.67 | 0.558893 |
Target: 5'- aGCaGUGAUCAgcCUGGCcggCGACCAGGu -3' miRNA: 3'- -CGcCGCUAGUa-GGCCGa--GUUGGUCUg -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 12830 | 0.67 | 0.558893 |
Target: 5'- aGCGGCGcgguaaGUCCGGUgUGGCuCGGGCg -3' miRNA: 3'- -CGCCGCuag---UAGGCCGaGUUG-GUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 22154 | 0.66 | 0.570001 |
Target: 5'- cGCGGCuGAaCAUC--GCUCGGCCGGGg -3' miRNA: 3'- -CGCCG-CUaGUAGgcCGAGUUGGUCUg -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 24592 | 0.66 | 0.570001 |
Target: 5'- -gGGCGAUCugaaagCCGGCgacuucgugaAGCUGGACg -3' miRNA: 3'- cgCCGCUAGua----GGCCGag--------UUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 14206 | 0.66 | 0.591245 |
Target: 5'- gGCGGaaaucauCGAUCucCCGGCU--ACCGGACc -3' miRNA: 3'- -CGCC-------GCUAGuaGGCCGAguUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 2376 | 0.66 | 0.592367 |
Target: 5'- cCGGCGGUuuucCAUCCGaGC-CGGCUGGAa -3' miRNA: 3'- cGCCGCUA----GUAGGC-CGaGUUGGUCUg -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 31525 | 0.66 | 0.603608 |
Target: 5'- aGCGGCGGccaguacgUAUgCGGCUCcguaaucuAUCAGGCa -3' miRNA: 3'- -CGCCGCUa-------GUAgGCCGAGu-------UGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 19104 | 0.66 | 0.603608 |
Target: 5'- aCGGCGAgCAcuggaCGuGCUCAACgCGGGCa -3' miRNA: 3'- cGCCGCUaGUag---GC-CGAGUUG-GUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 8377 | 0.67 | 0.547847 |
Target: 5'- uGUGaGCGaAUCggCCGucuucucuacGCUCGGCCAGGCc -3' miRNA: 3'- -CGC-CGC-UAGuaGGC----------CGAGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 28695 | 0.67 | 0.536871 |
Target: 5'- aGCGGCGAcCua-CGGCaagGGCCGGGCu -3' miRNA: 3'- -CGCCGCUaGuagGCCGag-UUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 22285 | 0.68 | 0.472872 |
Target: 5'- uGgGGUGAUCgcguGUCCGGUUCGAUCGccGAUc -3' miRNA: 3'- -CgCCGCUAG----UAGGCCGAGUUGGU--CUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 16457 | 0.76 | 0.14867 |
Target: 5'- gGCGGUGAUCGcCCGa-UCGACCAGGCu -3' miRNA: 3'- -CGCCGCUAGUaGGCcgAGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 3283 | 0.76 | 0.161781 |
Target: 5'- uGCaGGUGAUCA-CCaGCUCGAUCAGGCu -3' miRNA: 3'- -CG-CCGCUAGUaGGcCGAGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 13576 | 0.73 | 0.250494 |
Target: 5'- gGCGGCGG-CAagCUGcuGCUCAACCAGAUc -3' miRNA: 3'- -CGCCGCUaGUa-GGC--CGAGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 7267 | 0.7 | 0.349285 |
Target: 5'- cCGGCGcUCuguagcugCCGGUcgaggUCAACCAGGCg -3' miRNA: 3'- cGCCGCuAGua------GGCCG-----AGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 36286 | 0.7 | 0.372994 |
Target: 5'- cGCGGCGG-CAcugagcgaugcagaUCUGGCgcagcugCAGCCAGAg -3' miRNA: 3'- -CGCCGCUaGU--------------AGGCCGa------GUUGGUCUg -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 35514 | 0.7 | 0.375695 |
Target: 5'- cGUGGCaagGAUCGcggCCuGCUgGACCAGGCg -3' miRNA: 3'- -CGCCG---CUAGUa--GGcCGAgUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 35656 | 0.69 | 0.441337 |
Target: 5'- uUGGCGccacUCAguuccuuUCCcGCUCGACCGGACu -3' miRNA: 3'- cGCCGCu---AGU-------AGGcCGAGUUGGUCUG- -5' |
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30494 | 3' | -55.4 | NC_006548.1 | + | 13402 | 0.69 | 0.442336 |
Target: 5'- aGCGGCG-UCAcUCCGGCggaCAuCCuGGCc -3' miRNA: 3'- -CGCCGCuAGU-AGGCCGa--GUuGGuCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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