miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30521 3' -51.4 NC_006548.1 + 14036 0.66 0.828462
Target:  5'- uCCGCCgcgagcugGACUACuuGGCCgacCGUGACc -3'
miRNA:   3'- -GGCGG--------CUGAUGuuCUGGaacGUACUG- -5'
30521 3' -51.4 NC_006548.1 + 5017 0.66 0.818812
Target:  5'- -aG-CGAUaccaaggGCAAGACCUUGCGUGuCa -3'
miRNA:   3'- ggCgGCUGa------UGUUCUGGAACGUACuG- -5'
30521 3' -51.4 NC_006548.1 + 32853 0.66 0.818812
Target:  5'- cCCGCUGGCgggauuuucgUGCuggGGGCCUUGCGcuGCu -3'
miRNA:   3'- -GGCGGCUG----------AUGu--UCUGGAACGUacUG- -5'
30521 3' -51.4 NC_006548.1 + 15420 0.66 0.818812
Target:  5'- gCCgGCCGACgAUGAGAUCcaggGCAUGGa -3'
miRNA:   3'- -GG-CGGCUGaUGUUCUGGaa--CGUACUg -5'
30521 3' -51.4 NC_006548.1 + 35875 0.66 0.798869
Target:  5'- aUGCCGGCgcgauccGCGcGGCCggcgGCGUGAUa -3'
miRNA:   3'- gGCGGCUGa------UGUuCUGGaa--CGUACUG- -5'
30521 3' -51.4 NC_006548.1 + 36903 0.66 0.798869
Target:  5'- aCCGCaacCGGCUGCugcAGGCCgucaacUGguUGACu -3'
miRNA:   3'- -GGCG---GCUGAUGu--UCUGGa-----ACguACUG- -5'
30521 3' -51.4 NC_006548.1 + 8816 0.66 0.795809
Target:  5'- gUCGCaCGACgucgcccaaggaugUGCAgcaguugcAGACCguccUGCAUGACg -3'
miRNA:   3'- -GGCG-GCUG--------------AUGU--------UCUGGa---ACGUACUG- -5'
30521 3' -51.4 NC_006548.1 + 16594 0.67 0.788602
Target:  5'- aCGCCGA--ACAGcAUCUUGCugGUGACg -3'
miRNA:   3'- gGCGGCUgaUGUUcUGGAACG--UACUG- -5'
30521 3' -51.4 NC_006548.1 + 22787 0.67 0.778153
Target:  5'- aUCGCCGGCcggcACGAGcACCUucUGCGccugaaUGGCa -3'
miRNA:   3'- -GGCGGCUGa---UGUUC-UGGA--ACGU------ACUG- -5'
30521 3' -51.4 NC_006548.1 + 7813 0.67 0.778153
Target:  5'- gCUGCCGcgaGCUgcGCAAGGCUcUGCGcGACc -3'
miRNA:   3'- -GGCGGC---UGA--UGUUCUGGaACGUaCUG- -5'
30521 3' -51.4 NC_006548.1 + 3722 0.67 0.767536
Target:  5'- -aGCUGAggucGCAuAGGCUUUGCGUGGCg -3'
miRNA:   3'- ggCGGCUga--UGU-UCUGGAACGUACUG- -5'
30521 3' -51.4 NC_006548.1 + 23502 0.67 0.767536
Target:  5'- aUCGCCGAggGCAAGuucaGCCUcggGCcgGAUg -3'
miRNA:   3'- -GGCGGCUgaUGUUC----UGGAa--CGuaCUG- -5'
30521 3' -51.4 NC_006548.1 + 16972 0.67 0.767536
Target:  5'- cCCGCCGGCaUGCAggcGGAgCUgcuggaaGCcgGGCg -3'
miRNA:   3'- -GGCGGCUG-AUGU---UCUgGAa------CGuaCUG- -5'
30521 3' -51.4 NC_006548.1 + 23803 0.67 0.767536
Target:  5'- cCCGCCGGCcaugccggugGCGcGACCcgGCAgaUGGCa -3'
miRNA:   3'- -GGCGGCUGa---------UGUuCUGGaaCGU--ACUG- -5'
30521 3' -51.4 NC_006548.1 + 24514 0.67 0.767536
Target:  5'- uUGCCGcGCUGCAAGcgGCCauaUUGCA-GGCg -3'
miRNA:   3'- gGCGGC-UGAUGUUC--UGG---AACGUaCUG- -5'
30521 3' -51.4 NC_006548.1 + 29172 0.67 0.766465
Target:  5'- aCCGCCGAC--CAGGuagagcaacuuguGCCUcGCAUGGa -3'
miRNA:   3'- -GGCGGCUGauGUUC-------------UGGAaCGUACUg -5'
30521 3' -51.4 NC_006548.1 + 12278 0.68 0.723654
Target:  5'- cCCGUCGGCgcACAGGGCCUggcGCAg--- -3'
miRNA:   3'- -GGCGGCUGa-UGUUCUGGAa--CGUacug -5'
30521 3' -51.4 NC_006548.1 + 14107 0.68 0.712397
Target:  5'- uUCGCCGAUUu---GACCcgGUAUGGCa -3'
miRNA:   3'- -GGCGGCUGAuguuCUGGaaCGUACUG- -5'
30521 3' -51.4 NC_006548.1 + 3896 0.69 0.665468
Target:  5'- aUCGCCGgccacuucuccaaGCUGCAugcGGAgCUgcagUGCAUGGCg -3'
miRNA:   3'- -GGCGGC-------------UGAUGU---UCUgGA----ACGUACUG- -5'
30521 3' -51.4 NC_006548.1 + 14937 0.7 0.620269
Target:  5'- -gGCCGAuCUGcCGGGACUUcUGCAUGAg -3'
miRNA:   3'- ggCGGCU-GAU-GUUCUGGA-ACGUACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.