Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 336 | 0.66 | 0.562428 |
Target: 5'- -uGAGCUGGCuCGcAAGCgccugGAacugcauauacuGCAGCGg -3' miRNA: 3'- cgUUCGACCG-GCaUUCGa----CU------------CGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 476 | 0.68 | 0.443857 |
Target: 5'- aGCGAGCUGGCCG-AA-CUGAucGUcgaAGCGu -3' miRNA: 3'- -CGUUCGACCGGCaUUcGACU--CG---UCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 634 | 0.66 | 0.573723 |
Target: 5'- aCAGGC-GGCCGgccuggaacAGCUGccgaaaggauGGCGGCGg -3' miRNA: 3'- cGUUCGaCCGGCau-------UCGAC----------UCGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 838 | 0.68 | 0.443857 |
Target: 5'- gGCGcAGCUGGCCGagaugAGGCUGcccuGgAGCu -3' miRNA: 3'- -CGU-UCGACCGGCa----UUCGACu---CgUCGc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 1119 | 0.73 | 0.219909 |
Target: 5'- aGCGAGcCUGGCCGUcuGCgcggccagcaacgccUGuGCGGCGa -3' miRNA: 3'- -CGUUC-GACCGGCAuuCG---------------ACuCGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 1452 | 0.67 | 0.50703 |
Target: 5'- aGCAGuucCUGGCCGgcGGC-GGGCAGa- -3' miRNA: 3'- -CGUUc--GACCGGCauUCGaCUCGUCgc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 4703 | 0.69 | 0.384422 |
Target: 5'- uCGGGCUGGCCGaucaggaUGAuGCUGAcCAGCu -3' miRNA: 3'- cGUUCGACCGGC-------AUU-CGACUcGUCGc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 5556 | 0.66 | 0.551194 |
Target: 5'- aGCAAGacccaGGCCGaccuGGCUcGAGCGGuCGa -3' miRNA: 3'- -CGUUCga---CCGGCau--UCGA-CUCGUC-GC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 6277 | 0.66 | 0.573723 |
Target: 5'- uCGAGUUGuGCCGgGAGCUu-GCGGUGa -3' miRNA: 3'- cGUUCGAC-CGGCaUUCGAcuCGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 6917 | 0.66 | 0.58507 |
Target: 5'- uGCAGGC-GGU----AGCUGuGCAGCGc -3' miRNA: 3'- -CGUUCGaCCGgcauUCGACuCGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 7576 | 0.71 | 0.323859 |
Target: 5'- cCAAGUUGGCCGagcAGGCcGAGgAGCa -3' miRNA: 3'- cGUUCGACCGGCa--UUCGaCUCgUCGc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 10195 | 0.69 | 0.423795 |
Target: 5'- ---uGCUGGCCcaGAGCUaccuccagacGAGCAGCu -3' miRNA: 3'- cguuCGACCGGcaUUCGA----------CUCGUCGc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 13096 | 0.68 | 0.433758 |
Target: 5'- ---uGCUGcaGCUGcAGGUUGAGCAGCGc -3' miRNA: 3'- cguuCGAC--CGGCaUUCGACUCGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 13821 | 0.68 | 0.473866 |
Target: 5'- gGCgAAGCucgacgguuUGGCCGUGaAGCUGGaaaacgcGCAGCu -3' miRNA: 3'- -CG-UUCG---------ACCGGCAU-UCGACU-------CGUCGc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 14365 | 0.71 | 0.307686 |
Target: 5'- uGCAucGCUacGGCCagAAGCUgGAGCGGCGg -3' miRNA: 3'- -CGUu-CGA--CCGGcaUUCGA-CUCGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 14411 | 0.7 | 0.33218 |
Target: 5'- aGCGAuGCacGGCUGcacGGCUGGGCAGCu -3' miRNA: 3'- -CGUU-CGa-CCGGCau-UCGACUCGUCGc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 14742 | 0.67 | 0.528943 |
Target: 5'- cGCAuccAGCuUGGCCuucuGCUcagcGAGCAGCGc -3' miRNA: 3'- -CGU---UCG-ACCGGcauuCGA----CUCGUCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 16500 | 0.68 | 0.47492 |
Target: 5'- aGCAgcAGCUGcaGCgCGUGGGCUGGGaCcGCGu -3' miRNA: 3'- -CGU--UCGAC--CG-GCAUUCGACUC-GuCGC- -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 17468 | 0.74 | 0.200195 |
Target: 5'- cGC-AGCUGGCCG-AAGCgauGCAGCc -3' miRNA: 3'- -CGuUCGACCGGCaUUCGacuCGUCGc -5' |
|||||||
30548 | 3' | -55.2 | NC_006548.1 | + | 17610 | 0.73 | 0.211598 |
Target: 5'- cCAGGCcaUGGCCGagGGGCUGgaGGCAGCu -3' miRNA: 3'- cGUUCG--ACCGGCa-UUCGAC--UCGUCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home