miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30548 3' -55.2 NC_006548.1 + 36964 0.66 0.596459
Target:  5'- -gAAGCUGGCaCGacauacacGCUGAGCaucuacAGCGg -3'
miRNA:   3'- cgUUCGACCG-GCauu-----CGACUCG------UCGC- -5'
30548 3' -55.2 NC_006548.1 + 10195 0.69 0.423795
Target:  5'- ---uGCUGGCCcaGAGCUaccuccagacGAGCAGCu -3'
miRNA:   3'- cguuCGACCGGcaUUCGA----------CUCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 13821 0.68 0.473866
Target:  5'- gGCgAAGCucgacgguuUGGCCGUGaAGCUGGaaaacgcGCAGCu -3'
miRNA:   3'- -CG-UUCG---------ACCGGCAU-UCGACU-------CGUCGc -5'
30548 3' -55.2 NC_006548.1 + 16500 0.68 0.47492
Target:  5'- aGCAgcAGCUGcaGCgCGUGGGCUGGGaCcGCGu -3'
miRNA:   3'- -CGU--UCGAC--CG-GCAUUCGACUC-GuCGC- -5'
30548 3' -55.2 NC_006548.1 + 33437 0.67 0.51794
Target:  5'- uCGAGCUGGuuG--GGCUGGcGCGGUu -3'
miRNA:   3'- cGUUCGACCggCauUCGACU-CGUCGc -5'
30548 3' -55.2 NC_006548.1 + 20897 0.66 0.551194
Target:  5'- aGCcGGC-GGCCGagguGCUGcGCAGCu -3'
miRNA:   3'- -CGuUCGaCCGGCauu-CGACuCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 23052 0.66 0.562428
Target:  5'- cCAGGCUGcucaguugcuGCCGUugggugcaaucGAGCggGAGCGGCc -3'
miRNA:   3'- cGUUCGAC----------CGGCA-----------UUCGa-CUCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 21183 0.66 0.573723
Target:  5'- gGCAgcucggacGGcCUGGCCGcccAGGCUGccGGUAGCa -3'
miRNA:   3'- -CGU--------UC-GACCGGCa--UUCGAC--UCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 6917 0.66 0.58507
Target:  5'- uGCAGGC-GGU----AGCUGuGCAGCGc -3'
miRNA:   3'- -CGUUCGaCCGgcauUCGACuCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 27735 0.69 0.417883
Target:  5'- uGguGGC-GGCCGcgaaagaaaccccgGAGCUGGGCAGUu -3'
miRNA:   3'- -CguUCGaCCGGCa-------------UUCGACUCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 30848 0.69 0.394746
Target:  5'- cGCuGGGCUgcGGCCGUuauGC-GGGCAGCa -3'
miRNA:   3'- -CG-UUCGA--CCGGCAuu-CGaCUCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 27334 0.69 0.385353
Target:  5'- cGCucGcCUGGCCG--AGCagGAGCGGCa -3'
miRNA:   3'- -CGuuC-GACCGGCauUCGa-CUCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 33140 0.82 0.053505
Target:  5'- -gGGGCUGGCCGgu-GCUcGGGCAGCGg -3'
miRNA:   3'- cgUUCGACCGGCauuCGA-CUCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 35942 0.75 0.155299
Target:  5'- gGCGAGUUGGCCGgcaGGgUG-GCGGCGc -3'
miRNA:   3'- -CGUUCGACCGGCau-UCgACuCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 17468 0.74 0.200195
Target:  5'- cGC-AGCUGGCCG-AAGCgauGCAGCc -3'
miRNA:   3'- -CGuUCGACCGGCaUUCGacuCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 17610 0.73 0.211598
Target:  5'- cCAGGCcaUGGCCGagGGGCUGgaGGCAGCu -3'
miRNA:   3'- cGUUCG--ACCGGCa-UUCGAC--UCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 1119 0.73 0.219909
Target:  5'- aGCGAGcCUGGCCGUcuGCgcggccagcaacgccUGuGCGGCGa -3'
miRNA:   3'- -CGUUC-GACCGGCAuuCG---------------ACuCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 28998 0.72 0.251886
Target:  5'- aGCAAGCUgaugggaaucgagaaGGCCaaggcUGAGCUGcAGCAGCu -3'
miRNA:   3'- -CGUUCGA---------------CCGGc----AUUCGAC-UCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 14365 0.71 0.307686
Target:  5'- uGCAucGCUacGGCCagAAGCUgGAGCGGCGg -3'
miRNA:   3'- -CGUu-CGA--CCGGcaUUCGA-CUCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 4703 0.69 0.384422
Target:  5'- uCGGGCUGGCCGaucaggaUGAuGCUGAcCAGCu -3'
miRNA:   3'- cGUUCGACCGGC-------AUU-CGACUcGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.