Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30548 | 5' | -61.1 | NC_006548.1 | + | 1053 | 0.73 | 0.088588 |
Target: 5'- aUCGCUcGUCAGCAGcuCGGCCUGCAg -3' miRNA: 3'- aGGCGGcUAGUCGUCu-GCCGGGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 2247 | 0.67 | 0.270379 |
Target: 5'- --aGCCGGUCAGCuccGGCGccGCCgCGCAg -3' miRNA: 3'- aggCGGCUAGUCGu--CUGC--CGG-GCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 2849 | 0.7 | 0.172894 |
Target: 5'- cUCGUCGAUCAGCGccuuGGCcGCCUGCAg -3' miRNA: 3'- aGGCGGCUAGUCGU----CUGcCGGGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 4183 | 0.69 | 0.182492 |
Target: 5'- cUCCGCgGcauUCGGCAGACcaCCCGCGg -3' miRNA: 3'- -AGGCGgCu--AGUCGUCUGccGGGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 8879 | 0.66 | 0.2916 |
Target: 5'- uUCCGCUGAUCAcacGCuaccuGGCGG-CCGCc- -3' miRNA: 3'- -AGGCGGCUAGU---CGu----CUGCCgGGCGua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 12227 | 0.68 | 0.231689 |
Target: 5'- gCCGCuCGAaccagcacgCGGCGauacugcucGGCGGCCCGCGg -3' miRNA: 3'- aGGCG-GCUa--------GUCGU---------CUGCCGGGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 13341 | 0.68 | 0.237797 |
Target: 5'- uUCCGCCGGcgcucaaaCAGC-GACcuGGCCCGCc- -3' miRNA: 3'- -AGGCGGCUa-------GUCGuCUG--CCGGGCGua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 16066 | 0.67 | 0.277311 |
Target: 5'- cUCCGCagugaAGCGGAUGuuGCCCGCAg -3' miRNA: 3'- -AGGCGgcuagUCGUCUGC--CGGGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 16649 | 0.67 | 0.256933 |
Target: 5'- uUCCGCUauGAcCAGgAcGGCGGCCUGCGc -3' miRNA: 3'- -AGGCGG--CUaGUCgU-CUGCCGGGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 16972 | 0.67 | 0.250418 |
Target: 5'- cCCGCCGG-CAuGCAGGCGGagCUGCu- -3' miRNA: 3'- aGGCGGCUaGU-CGUCUGCCg-GGCGua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 17439 | 0.68 | 0.225714 |
Target: 5'- gCCGuCCGAcccagCAGCGgcGAUGGCgCCGCAg -3' miRNA: 3'- aGGC-GGCUa----GUCGU--CUGCCG-GGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 18796 | 0.66 | 0.32189 |
Target: 5'- -gCGUCGAgCAGC--ACGGCCUGCGg -3' miRNA: 3'- agGCGGCUaGUCGucUGCCGGGCGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 20853 | 0.7 | 0.150847 |
Target: 5'- uUCUGgCGcggCAGCAGGCGGCCgGCc- -3' miRNA: 3'- -AGGCgGCua-GUCGUCUGCCGGgCGua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 21163 | 0.66 | 0.289421 |
Target: 5'- cCCGCCGuaucgugauccauggCAGCucGGACGGCCUGg-- -3' miRNA: 3'- aGGCGGCua-------------GUCG--UCUGCCGGGCgua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 23595 | 0.7 | 0.168266 |
Target: 5'- aCCGCCuggcggGGUCAGCGGGucaucCGGCCCGa-- -3' miRNA: 3'- aGGCGG------CUAGUCGUCU-----GCCGGGCgua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 25924 | 0.67 | 0.250418 |
Target: 5'- cCCGCgCGGgcCAGCAGGCGGUgacauCCGCc- -3' miRNA: 3'- aGGCG-GCUa-GUCGUCUGCCG-----GGCGua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 27013 | 1.05 | 0.000293 |
Target: 5'- gUCCGCCGAUCAGCAGACGGCCCGCAUc -3' miRNA: 3'- -AGGCGGCUAGUCGUCUGCCGGGCGUA- -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 27068 | 0.69 | 0.182492 |
Target: 5'- gUCUGCUGAUCGGCGGACucGCCgaCGCu- -3' miRNA: 3'- -AGGCGGCUAGUCGUCUGc-CGG--GCGua -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 28022 | 0.69 | 0.192558 |
Target: 5'- uUCUGCCGcgguUCGGC--GCGGCCCuGCAg -3' miRNA: 3'- -AGGCGGCu---AGUCGucUGCCGGG-CGUa -5' |
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30548 | 5' | -61.1 | NC_006548.1 | + | 28061 | 0.7 | 0.159341 |
Target: 5'- gUCCaGCCucaCAGCAGGCGGCUgGCGg -3' miRNA: 3'- -AGG-CGGcuaGUCGUCUGCCGGgCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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