miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 18016 0.67 0.435244
Target:  5'- gCGCCcGCcaGGCUCGGCcacccUCCGGCUc -3'
miRNA:   3'- -GCGGuCG--UCGAGCUGuuau-GGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 37396 0.67 0.435244
Target:  5'- aGUCGGCAGCguggCGACGcgccccuUGacgaCCGGCUg -3'
miRNA:   3'- gCGGUCGUCGa---GCUGUu------AUg---GGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 3811 0.67 0.432294
Target:  5'- cCGCCAugcacuGCAGCUCcGCAugcagcuuggagaaGUGgCCGGCg -3'
miRNA:   3'- -GCGGU------CGUCGAGcUGU--------------UAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 20968 0.67 0.425456
Target:  5'- gGCCAGCaAGCUgCG-CAGcACCuCGGCc -3'
miRNA:   3'- gCGGUCG-UCGA-GCuGUUaUGG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 789 0.67 0.425456
Target:  5'- gGCCAGCuGCgccUCGAUGAccuggACCuCGGCg -3'
miRNA:   3'- gCGGUCGuCG---AGCUGUUa----UGG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 4833 0.67 0.425456
Target:  5'- aGCCGGCGGCaUGGCug-ACCUucaaGGCUc -3'
miRNA:   3'- gCGGUCGUCGaGCUGuuaUGGG----CCGA- -5'
30558 5' -57.2 NC_006548.1 + 22680 0.67 0.424485
Target:  5'- cCGCCacgcuggcgaucgAGCAGCUCGuCGcUGCCauucaGGCg -3'
miRNA:   3'- -GCGG-------------UCGUCGAGCuGUuAUGGg----CCGa -5'
30558 5' -57.2 NC_006548.1 + 11865 0.67 0.419647
Target:  5'- uCGCCcGCAugaauGCUCGGcCAaccuggaggucguagGUGCCUGGCUg -3'
miRNA:   3'- -GCGGuCGU-----CGAGCU-GU---------------UAUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 12587 0.67 0.415801
Target:  5'- gGCCAGCuGgUCGGCGccggAUGCCgaGGCc -3'
miRNA:   3'- gCGGUCGuCgAGCUGU----UAUGGg-CCGa -5'
30558 5' -57.2 NC_006548.1 + 20877 0.67 0.406281
Target:  5'- -aCCAGCAGCUCGAUcaccgGAgccuUCUGGCg -3'
miRNA:   3'- gcGGUCGUCGAGCUG-----UUau--GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 12218 0.67 0.406281
Target:  5'- -aCCAGCAcGCggCGAUAcUGCUCGGCg -3'
miRNA:   3'- gcGGUCGU-CGa-GCUGUuAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 5671 0.67 0.405337
Target:  5'- uGCCGGaagacCAGCUCGACGccaucgccaaccaGUugcgcaagccgGCCCGGCc -3'
miRNA:   3'- gCGGUC-----GUCGAGCUGU-------------UA-----------UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 7059 0.68 0.387659
Target:  5'- gCGCCAGCGGCUUGA-----UCCGuGCg -3'
miRNA:   3'- -GCGGUCGUCGAGCUguuauGGGC-CGa -5'
30558 5' -57.2 NC_006548.1 + 29916 0.68 0.384914
Target:  5'- aCGCUuguugauguccaggAGCAGCggGGucAUGCCCGGCUg -3'
miRNA:   3'- -GCGG--------------UCGUCGagCUguUAUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 12147 0.68 0.382183
Target:  5'- gGCCAGCAGCagGAgcauCAgcgcaccgacccagcAUGCUCGGCg -3'
miRNA:   3'- gCGGUCGUCGagCU----GU---------------UAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 34153 0.68 0.378561
Target:  5'- aGCCGGCA-UUUGAUcugcACCCGGCUg -3'
miRNA:   3'- gCGGUCGUcGAGCUGuua-UGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 12376 0.68 0.378561
Target:  5'- gGCCGGCGauccaCUCaGCGGUACCgGGCa -3'
miRNA:   3'- gCGGUCGUc----GAGcUGUUAUGGgCCGa -5'
30558 5' -57.2 NC_006548.1 + 22547 0.68 0.376758
Target:  5'- cCGCCGGCGGaggagagccugaUCGACGGccaacUGgCCGGCg -3'
miRNA:   3'- -GCGGUCGUCg-----------AGCUGUU-----AUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 18590 0.68 0.369607
Target:  5'- uGaCAGCGuGC-CGACAuggACCCGGCg -3'
miRNA:   3'- gCgGUCGU-CGaGCUGUua-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 13343 0.68 0.369607
Target:  5'- cCGCCGGC-GCUCaaACAGcgACCUGGCc -3'
miRNA:   3'- -GCGGUCGuCGAGc-UGUUa-UGGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.