miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 32155 0.71 0.253131
Target:  5'- gGCCAGCGcCUCGACcuUGgCUGGCa -3'
miRNA:   3'- gCGGUCGUcGAGCUGuuAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 1349 0.7 0.266733
Target:  5'- uGuCCGGCAGCUCGcGCAucuuGUACCCGaCUu -3'
miRNA:   3'- gC-GGUCGUCGAGC-UGU----UAUGGGCcGA- -5'
30558 5' -57.2 NC_006548.1 + 19907 0.7 0.273752
Target:  5'- gGCCGGCAcgucgcuCUCGAUggUcGCCCGGUg -3'
miRNA:   3'- gCGGUCGUc------GAGCUGuuA-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 27900 0.7 0.279473
Target:  5'- aGCUAguucuGCAGCUCGGCcagcgcguuCCCGGCg -3'
miRNA:   3'- gCGGU-----CGUCGAGCUGuuau-----GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 8281 0.69 0.311073
Target:  5'- aGCCGGCAGCg-------ACCCGGCg -3'
miRNA:   3'- gCGGUCGUCGagcuguuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 18222 0.68 0.360799
Target:  5'- aGCUGGCAucGCUgGGCAAggacgGCCCGGaCg -3'
miRNA:   3'- gCGGUCGU--CGAgCUGUUa----UGGGCC-Ga -5'
30558 5' -57.2 NC_006548.1 + 12218 0.67 0.406281
Target:  5'- -aCCAGCAcGCggCGAUAcUGCUCGGCg -3'
miRNA:   3'- gcGGUCGU-CGa-GCUGUuAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 12587 0.67 0.415801
Target:  5'- gGCCAGCuGgUCGGCGccggAUGCCgaGGCc -3'
miRNA:   3'- gCGGUCGuCgAGCUGU----UAUGGg-CCGa -5'
30558 5' -57.2 NC_006548.1 + 20968 0.67 0.425456
Target:  5'- gGCCAGCaAGCUgCG-CAGcACCuCGGCc -3'
miRNA:   3'- gCGGUCG-UCGA-GCuGUUaUGG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 37396 0.67 0.435244
Target:  5'- aGUCGGCAGCguggCGACGcgccccuUGacgaCCGGCUg -3'
miRNA:   3'- gCGGUCGUCGa---GCUGUu------AUg---GGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 18016 0.67 0.435244
Target:  5'- gCGCCcGCcaGGCUCGGCcacccUCCGGCUc -3'
miRNA:   3'- -GCGGuCG--UCGAGCUGuuau-GGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 18729 0.67 0.44516
Target:  5'- aCGCCuugGGCAGCccugCGGCGGUugucGCCaUGGCUu -3'
miRNA:   3'- -GCGG---UCGUCGa---GCUGUUA----UGG-GCCGA- -5'
30558 5' -57.2 NC_006548.1 + 24602 0.66 0.455201
Target:  5'- gGCgGGCAGCUCGAUc-UGCgaGGCc -3'
miRNA:   3'- gCGgUCGUCGAGCUGuuAUGggCCGa -5'
30558 5' -57.2 NC_006548.1 + 34974 0.66 0.455201
Target:  5'- uGCCGGCAuuccCUCGGCAAcgaaCCGGUg -3'
miRNA:   3'- gCGGUCGUc---GAGCUGUUaug-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 22593 0.66 0.465364
Target:  5'- cCGCCGGCGGCU-----GUGCgCCGGUa -3'
miRNA:   3'- -GCGGUCGUCGAgcuguUAUG-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 18782 0.66 0.475643
Target:  5'- gGCCuGCGGCUgGGCGAggauCUgCGGCa -3'
miRNA:   3'- gCGGuCGUCGAgCUGUUau--GG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 1733 0.66 0.475643
Target:  5'- uCGCCAGCaAGCUCG-CAAUgagAUCCG-Cg -3'
miRNA:   3'- -GCGGUCG-UCGAGCuGUUA---UGGGCcGa -5'
30558 5' -57.2 NC_006548.1 + 22165 0.66 0.475643
Target:  5'- -uCCAGCAGCUCcuGCAGgaagGCCauCGGCa -3'
miRNA:   3'- gcGGUCGUCGAGc-UGUUa---UGG--GCCGa -5'
30558 5' -57.2 NC_006548.1 + 5536 0.66 0.475643
Target:  5'- gGCUcgAGCGG-UCGACcugaGCCCGGCg -3'
miRNA:   3'- gCGG--UCGUCgAGCUGuua-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 21430 0.66 0.486034
Target:  5'- gGCCGGCGGCagagucgCGGCAAccgcucGCCCcugGGCg -3'
miRNA:   3'- gCGGUCGUCGa------GCUGUUa-----UGGG---CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.