miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 36588 0.66 0.465364
Target:  5'- aCGCC-GCGGC-CGGCAccgcgGUGCUCGcGCg -3'
miRNA:   3'- -GCGGuCGUCGaGCUGU-----UAUGGGC-CGa -5'
30558 5' -57.2 NC_006548.1 + 13343 0.68 0.369607
Target:  5'- cCGCCGGC-GCUCaaACAGcgACCUGGCc -3'
miRNA:   3'- -GCGGUCGuCGAGc-UGUUa-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 22547 0.68 0.376758
Target:  5'- cCGCCGGCGGaggagagccugaUCGACGGccaacUGgCCGGCg -3'
miRNA:   3'- -GCGGUCGUCg-----------AGCUGUU-----AUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 11865 0.67 0.419647
Target:  5'- uCGCCcGCAugaauGCUCGGcCAaccuggaggucguagGUGCCUGGCUg -3'
miRNA:   3'- -GCGGuCGU-----CGAGCU-GU---------------UAUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 22680 0.67 0.424485
Target:  5'- cCGCCacgcuggcgaucgAGCAGCUCGuCGcUGCCauucaGGCg -3'
miRNA:   3'- -GCGG-------------UCGUCGAGCuGUuAUGGg----CCGa -5'
30558 5' -57.2 NC_006548.1 + 789 0.67 0.425456
Target:  5'- gGCCAGCuGCgccUCGAUGAccuggACCuCGGCg -3'
miRNA:   3'- gCGGUCGuCG---AGCUGUUa----UGG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 4833 0.67 0.425456
Target:  5'- aGCCGGCGGCaUGGCug-ACCUucaaGGCUc -3'
miRNA:   3'- gCGGUCGUCGaGCUGuuaUGGG----CCGA- -5'
30558 5' -57.2 NC_006548.1 + 3811 0.67 0.432294
Target:  5'- cCGCCAugcacuGCAGCUCcGCAugcagcuuggagaaGUGgCCGGCg -3'
miRNA:   3'- -GCGGU------CGUCGAGcUGU--------------UAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 29657 0.66 0.455201
Target:  5'- uGCCAGCGGUgccggugCGGCAGgug-CGGCUg -3'
miRNA:   3'- gCGGUCGUCGa------GCUGUUauggGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 18222 0.68 0.360799
Target:  5'- aGCUGGCAucGCUgGGCAAggacgGCCCGGaCg -3'
miRNA:   3'- gCGGUCGU--CGAgCUGUUa----UGGGCC-Ga -5'
30558 5' -57.2 NC_006548.1 + 8281 0.69 0.311073
Target:  5'- aGCCGGCAGCg-------ACCCGGCg -3'
miRNA:   3'- gCGGUCGUCGagcuguuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 27900 0.7 0.279473
Target:  5'- aGCUAguucuGCAGCUCGGCcagcgcguuCCCGGCg -3'
miRNA:   3'- gCGGU-----CGUCGAGCUGuuau-----GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 848 0.74 0.142484
Target:  5'- uGCCGGCGGCUCG-Cu-UGCUgGGCUg -3'
miRNA:   3'- gCGGUCGUCGAGCuGuuAUGGgCCGA- -5'
30558 5' -57.2 NC_006548.1 + 23804 0.74 0.146561
Target:  5'- cCGCCGGCcauGCcggUGGCGcgACCCGGCa -3'
miRNA:   3'- -GCGGUCGu--CGa--GCUGUuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 1140 0.73 0.188283
Target:  5'- gGCCAGCAacGCcugugCGGCGAUcAUCCGGCUc -3'
miRNA:   3'- gCGGUCGU--CGa----GCUGUUA-UGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 28025 0.72 0.204364
Target:  5'- uGCC-GCGGUUCGGCGcgGCCCuGCa -3'
miRNA:   3'- gCGGuCGUCGAGCUGUuaUGGGcCGa -5'
30558 5' -57.2 NC_006548.1 + 21164 0.71 0.238201
Target:  5'- cCGCCguaucgugauccauGGCAGCUCGGacg-GCCUGGCc -3'
miRNA:   3'- -GCGG--------------UCGUCGAGCUguuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 32155 0.71 0.253131
Target:  5'- gGCCAGCGcCUCGACcuUGgCUGGCa -3'
miRNA:   3'- gCGGUCGUcGAGCUGuuAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 1349 0.7 0.266733
Target:  5'- uGuCCGGCAGCUCGcGCAucuuGUACCCGaCUu -3'
miRNA:   3'- gC-GGUCGUCGAGC-UGU----UAUGGGCcGA- -5'
30558 5' -57.2 NC_006548.1 + 19907 0.7 0.273752
Target:  5'- gGCCGGCAcgucgcuCUCGAUggUcGCCCGGUg -3'
miRNA:   3'- gCGGUCGUc------GAGCUGuuA-UGGGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.