miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 29916 0.68 0.384914
Target:  5'- aCGCUuguugauguccaggAGCAGCggGGucAUGCCCGGCUg -3'
miRNA:   3'- -GCGG--------------UCGUCGagCUguUAUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 32849 0.73 0.183175
Target:  5'- uGCCAGCAGCUgGAUG---UCCGGCc -3'
miRNA:   3'- gCGGUCGUCGAgCUGUuauGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 32900 0.73 0.183175
Target:  5'- cCGCCAGCGGguaucgcaCUCGACcguuuGUGCgCCGGCc -3'
miRNA:   3'- -GCGGUCGUC--------GAGCUGu----UAUG-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 36251 0.68 0.359055
Target:  5'- -uUCGGCGGCUgGACugcggacguCCCGGCUg -3'
miRNA:   3'- gcGGUCGUCGAgCUGuuau-----GGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 17890 0.68 0.360799
Target:  5'- cCGCCAcCAGgUCGGCGcgAuuugcCCCGGCg -3'
miRNA:   3'- -GCGGUcGUCgAGCUGUuaU-----GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 746 0.72 0.209983
Target:  5'- aGCCAGauCAGCUcaCGGCAAU-CCUGGCg -3'
miRNA:   3'- gCGGUC--GUCGA--GCUGUUAuGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 23404 0.7 0.288233
Target:  5'- gGCCAGUGGCa-GACuGUAgcCCCGGCg -3'
miRNA:   3'- gCGGUCGUCGagCUGuUAU--GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 14393 0.69 0.32705
Target:  5'- gGCUgGGCAGCUCGcCGGcuucgGCCUGGCUc -3'
miRNA:   3'- gCGG-UCGUCGAGCuGUUa----UGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 12147 0.68 0.382183
Target:  5'- gGCCAGCAGCagGAgcauCAgcgcaccgacccagcAUGCUCGGCg -3'
miRNA:   3'- gCGGUCGUCGagCU----GU---------------UAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 20877 0.67 0.406281
Target:  5'- -aCCAGCAGCUCGAUcaccgGAgccuUCUGGCg -3'
miRNA:   3'- gcGGUCGUCGAGCUG-----UUau--GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 17064 0.66 0.50713
Target:  5'- aGUCGGCGGUccCGGagc-GCCCGGCUu -3'
miRNA:   3'- gCGGUCGUCGa-GCUguuaUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 1048 0.71 0.253131
Target:  5'- uCGUCAGCAGCUCGGCcugcaggacGAUGucuaUCGGCa -3'
miRNA:   3'- -GCGGUCGUCGAGCUG---------UUAUg---GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 28959 0.71 0.246548
Target:  5'- gCGCCGGCcGcCUCGACGGUuuGgCCGGUg -3'
miRNA:   3'- -GCGGUCGuC-GAGCUGUUA--UgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 34153 0.68 0.378561
Target:  5'- aGCCGGCA-UUUGAUcugcACCCGGCUg -3'
miRNA:   3'- gCGGUCGUcGAGCUGuua-UGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 12376 0.68 0.378561
Target:  5'- gGCCGGCGauccaCUCaGCGGUACCgGGCa -3'
miRNA:   3'- gCGGUCGUc----GAGcUGUUAUGGgCCGa -5'
30558 5' -57.2 NC_006548.1 + 14620 0.7 0.273752
Target:  5'- aCGCCAGCAGUcCGACGcgAUcaGCCgGGUc -3'
miRNA:   3'- -GCGGUCGUCGaGCUGU--UA--UGGgCCGa -5'
30558 5' -57.2 NC_006548.1 + 5671 0.67 0.405337
Target:  5'- uGCCGGaagacCAGCUCGACGccaucgccaaccaGUugcgcaagccgGCCCGGCc -3'
miRNA:   3'- gCGGUC-----GUCGAGCUGU-------------UA-----------UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 12218 0.67 0.406281
Target:  5'- -aCCAGCAcGCggCGAUAcUGCUCGGCg -3'
miRNA:   3'- gcGGUCGU-CGa-GCUGUuAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 16971 0.7 0.288233
Target:  5'- cCGCCAGUAGCUUGGCcuuGUcCUCGGg- -3'
miRNA:   3'- -GCGGUCGUCGAGCUGu--UAuGGGCCga -5'
30558 5' -57.2 NC_006548.1 + 18590 0.68 0.369607
Target:  5'- uGaCAGCGuGC-CGACAuggACCCGGCg -3'
miRNA:   3'- gCgGUCGU-CGaGCUGUua-UGGGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.