miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 29264 1.08 0.000411
Target:  5'- cCGCCAGCAGCUCGACAAUACCCGGCUg -3'
miRNA:   3'- -GCGGUCGUCGAGCUGUUAUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 848 0.74 0.142484
Target:  5'- uGCCGGCGGCUCG-Cu-UGCUgGGCUg -3'
miRNA:   3'- gCGGUCGUCGAGCuGuuAUGGgCCGA- -5'
30558 5' -57.2 NC_006548.1 + 23804 0.74 0.146561
Target:  5'- cCGCCGGCcauGCcggUGGCGcgACCCGGCa -3'
miRNA:   3'- -GCGGUCGu--CGa--GCUGUuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 32849 0.73 0.183175
Target:  5'- uGCCAGCAGCUgGAUG---UCCGGCc -3'
miRNA:   3'- gCGGUCGUCGAgCUGUuauGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 32900 0.73 0.183175
Target:  5'- cCGCCAGCGGguaucgcaCUCGACcguuuGUGCgCCGGCc -3'
miRNA:   3'- -GCGGUCGUC--------GAGCUGu----UAUG-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 1140 0.73 0.188283
Target:  5'- gGCCAGCAacGCcugugCGGCGAUcAUCCGGCUc -3'
miRNA:   3'- gCGGUCGU--CGa----GCUGUUA-UGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 28025 0.72 0.204364
Target:  5'- uGCC-GCGGUUCGGCGcgGCCCuGCa -3'
miRNA:   3'- gCGGuCGUCGAGCUGUuaUGGGcCGa -5'
30558 5' -57.2 NC_006548.1 + 746 0.72 0.209983
Target:  5'- aGCCAGauCAGCUcaCGGCAAU-CCUGGCg -3'
miRNA:   3'- gCGGUC--GUCGA--GCUGUUAuGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 21164 0.71 0.238201
Target:  5'- cCGCCguaucgugauccauGGCAGCUCGGacg-GCCUGGCc -3'
miRNA:   3'- -GCGG--------------UCGUCGAGCUguuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 28959 0.71 0.246548
Target:  5'- gCGCCGGCcGcCUCGACGGUuuGgCCGGUg -3'
miRNA:   3'- -GCGGUCGuC-GAGCUGUUA--UgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 32155 0.71 0.253131
Target:  5'- gGCCAGCGcCUCGACcuUGgCUGGCa -3'
miRNA:   3'- gCGGUCGUcGAGCUGuuAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 1048 0.71 0.253131
Target:  5'- uCGUCAGCAGCUCGGCcugcaggacGAUGucuaUCGGCa -3'
miRNA:   3'- -GCGGUCGUCGAGCUG---------UUAUg---GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 1349 0.7 0.266733
Target:  5'- uGuCCGGCAGCUCGcGCAucuuGUACCCGaCUu -3'
miRNA:   3'- gC-GGUCGUCGAGC-UGU----UAUGGGCcGA- -5'
30558 5' -57.2 NC_006548.1 + 19907 0.7 0.273752
Target:  5'- gGCCGGCAcgucgcuCUCGAUggUcGCCCGGUg -3'
miRNA:   3'- gCGGUCGUc------GAGCUGuuA-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 14620 0.7 0.273752
Target:  5'- aCGCCAGCAGUcCGACGcgAUcaGCCgGGUc -3'
miRNA:   3'- -GCGGUCGUCGaGCUGU--UA--UGGgCCGa -5'
30558 5' -57.2 NC_006548.1 + 27900 0.7 0.279473
Target:  5'- aGCUAguucuGCAGCUCGGCcagcgcguuCCCGGCg -3'
miRNA:   3'- gCGGU-----CGUCGAGCUGuuau-----GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 16971 0.7 0.288233
Target:  5'- cCGCCAGUAGCUUGGCcuuGUcCUCGGg- -3'
miRNA:   3'- -GCGGUCGUCGAGCUGu--UAuGGGCCga -5'
30558 5' -57.2 NC_006548.1 + 23404 0.7 0.288233
Target:  5'- gGCCAGUGGCa-GACuGUAgcCCCGGCg -3'
miRNA:   3'- gCGGUCGUCGagCUGuUAU--GGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 8281 0.69 0.311073
Target:  5'- aGCCGGCAGCg-------ACCCGGCg -3'
miRNA:   3'- gCGGUCGUCGagcuguuaUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 14393 0.69 0.32705
Target:  5'- gGCUgGGCAGCUCGcCGGcuucgGCCUGGCUc -3'
miRNA:   3'- gCGG-UCGUCGAGCuGUUa----UGGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.